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    ago4 argonaute RISC component 4 [ Sebastes umbrosus (honeycomb rockfish) ]

    Gene ID: 119502930, updated on 21-Mar-2024

    Summary

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    Gene symbol
    ago4
    Gene description
    argonaute RISC component 4
    See related
    EnsemblRapid:ENSSUBG00005008848
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sebastes umbrosus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Scorpaenoidei; Sebastidae; Sebastinae; Sebastes
    Orthologs
    zebrafish all
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    Genomic context

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    See ago4 in Genome Data Viewer
    Location:
    chromosome: 15
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    100 current fSebUmb1.pri (GCF_015220745.1) 15 NC_051283.1 (25678294..25708228, complement)

    Chromosome 15 - NC_051283.1Genomic Context describing neighboring genes Neighboring gene claudin-4 Neighboring gene AFG2 interacting ribosome maturation factor Neighboring gene claspin Neighboring gene uncharacterized LOC119503947

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_051283.1 Chromosome 15 Reference fSebUmb1.pri

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein argonaute-4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sebastes umbrosus Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fSebUmb1.pri

    Genomic

    1. NC_051283.1 Reference fSebUmb1.pri

      Range
      25678294..25708228 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_037794246.1 → XP_037650174.1  protein argonaute-4 isoform X11

      Conserved Domains (2) summary
      PLN03202
      Location:1 → 885
      PLN03202; protein argonaute; Provisional
      cd04657
      Location:409 → 844
      Piwi_ago-like; PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the ...

    2. XM_037794241.1 → XP_037650169.1  protein argonaute-4 isoform X7

      Conserved Domains (2) summary
      PLN03202
      Location:1 → 896
      PLN03202; protein argonaute; Provisional
      cd04657
      Location:409 → 855
      Piwi_ago-like; PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the ...

    3. XM_037794239.1 → XP_037650167.1  protein argonaute-4 isoform X5

      Conserved Domains (4) summary
      cd02846
      Location:242 → 362
      PAZ_argonaute_like; PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille. ...
      cd04657
      Location:409 → 860
      Piwi_ago-like; PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the ...
      pfam08699
      Location:191 → 241
      ArgoL1; Argonaute linker 1 domain
      pfam16486
      Location:51 → 180
      ArgoN; N-terminal domain of argonaute

    4. XM_037794240.1 → XP_037650168.1  protein argonaute-4 isoform X6

      Conserved Domains (4) summary
      cd02846
      Location:242 → 362
      PAZ_argonaute_like; PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille. ...
      cd04657
      Location:409 → 860
      Piwi_ago-like; PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the ...
      pfam08699
      Location:191 → 241
      ArgoL1; Argonaute linker 1 domain
      pfam16486
      Location:51 → 180
      ArgoN; N-terminal domain of argonaute

    5. XM_037794238.1 → XP_037650166.1  protein argonaute-4 isoform X4

      Conserved Domains (4) summary
      cd02846
      Location:242 → 362
      PAZ_argonaute_like; PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille. ...
      cd04657
      Location:409 → 863
      Piwi_ago-like; PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the ...
      pfam08699
      Location:191 → 241
      ArgoL1; Argonaute linker 1 domain
      pfam16486
      Location:51 → 180
      ArgoN; N-terminal domain of argonaute

    6. XM_037794235.1 → XP_037650163.1  protein argonaute-4 isoform X1

      Conserved Domains (4) summary
      cd02846
      Location:242 → 362
      PAZ_argonaute_like; PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille. ...
      cd04657
      Location:409 → 871
      Piwi_ago-like; PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the ...
      pfam08699
      Location:191 → 241
      ArgoL1; Argonaute linker 1 domain
      pfam16486
      Location:51 → 180
      ArgoN; N-terminal domain of argonaute

    7. XM_037794244.1 → XP_037650172.1  protein argonaute-4 isoform X9

      Conserved Domains (4) summary
      cd02846
      Location:219 → 339
      PAZ_argonaute_like; PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille. ...
      cd04657
      Location:386 → 848
      Piwi_ago-like; PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the ...
      pfam08699
      Location:168 → 218
      ArgoL1; Argonaute linker 1 domain
      pfam16486
      Location:28 → 157
      ArgoN; N-terminal domain of argonaute

    8. XM_037794237.1 → XP_037650165.1  protein argonaute-4 isoform X3

      Conserved Domains (4) summary
      cd02846
      Location:242 → 362
      PAZ_argonaute_like; PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille. ...
      cd04657
      Location:409 → 866
      Piwi_ago-like; PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the ...
      pfam08699
      Location:191 → 241
      ArgoL1; Argonaute linker 1 domain
      pfam16486
      Location:51 → 180
      ArgoN; N-terminal domain of argonaute

    9. XM_037794236.1 → XP_037650164.1  protein argonaute-4 isoform X2

      Conserved Domains (4) summary
      cd02846
      Location:242 → 362
      PAZ_argonaute_like; PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille. ...
      cd04657
      Location:409 → 868
      Piwi_ago-like; PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the ...
      pfam08699
      Location:191 → 241
      ArgoL1; Argonaute linker 1 domain
      pfam16486
      Location:51 → 180
      ArgoN; N-terminal domain of argonaute

    10. XM_037794248.1 → XP_037650176.1  protein argonaute-4 isoform X13

      Conserved Domains (4) summary
      cd02846
      Location:219 → 339
      PAZ_argonaute_like; PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille. ...
      cd04657
      Location:386 → 821
      Piwi_ago-like; PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the ...
      pfam08699
      Location:168 → 218
      ArgoL1; Argonaute linker 1 domain
      pfam16486
      Location:28 → 157
      ArgoN; N-terminal domain of argonaute

    11. XM_037794245.1 → XP_037650173.1  protein argonaute-4 isoform X10

      Conserved Domains (4) summary
      cd02846
      Location:219 → 339
      PAZ_argonaute_like; PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille. ...
      cd04657
      Location:386 → 845
      Piwi_ago-like; PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the ...
      pfam08699
      Location:168 → 218
      ArgoL1; Argonaute linker 1 domain
      pfam16486
      Location:28 → 157
      ArgoN; N-terminal domain of argonaute

    12. XM_037794247.1 → XP_037650175.1  protein argonaute-4 isoform X12

      Conserved Domains (4) summary
      cd02846
      Location:219 → 339
      PAZ_argonaute_like; PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille. ...
      cd04657
      Location:386 → 840
      Piwi_ago-like; PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the ...
      pfam08699
      Location:168 → 218
      ArgoL1; Argonaute linker 1 domain
      pfam16486
      Location:28 → 157
      ArgoN; N-terminal domain of argonaute

    13. XM_037794243.1 → XP_037650171.1  protein argonaute-4 isoform X8

      Related
      ENSSUBP00005037297.1, ENSSUBT00005053541.1
      Conserved Domains (2) summary
      PLN03202
      Location:1 → 896
      PLN03202; protein argonaute; Provisional
      cd04657
      Location:409 → 855
      Piwi_ago-like; PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the ...
    Nucleotide Protein
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