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    TCFL5 transcription factor like 5 [ Chlorocebus sabaeus (green monkey) ]

    Gene ID: 103242977, updated on 11-Mar-2024

    Summary

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    Gene symbol
    TCFL5
    Gene description
    transcription factor like 5
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Chlorocebus sabaeus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Chlorocebus
    Orthologs
    human mouse all
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    Genomic context

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    See TCFL5 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    102 current Vero_WHO_p1.0 (GCF_015252025.1) Unplaced Scaffold NW_023666050.1 (49194413..49238931)
    100 previous assembly Chlorocebus_sabeus 1.1 (GCF_000409795.2) 2 NC_023643.1 (1364343..1385111)

    NW_023666050.1Genomic Context describing neighboring genes Neighboring gene death inducer-obliterator 1 Neighboring gene ADP-ribosylation factor 4-like Neighboring gene putative DPH3 homolog B Neighboring gene collagen type IX alpha 3 chain Neighboring gene opioid growth factor receptor Neighboring gene MRG domain binding protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in spermatogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription factor-like 5 protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Chlorocebus sabaeus Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Vero_WHO_p1.0

    Genomic

    1. NW_023666050.1 Reference Vero_WHO_p1.0

      Range
      49194413..49238931
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008011596.2 → XP_008009787.1  transcription factor-like 5 protein isoform X1

    2. XM_008011606.2 → XP_008009797.2  transcription factor-like 5 protein isoform X2

      Conserved Domains (1) summary
      cd18909
      Location:396 → 455
      bHLH_TCFL5; basic helix-loop-helix (bHLH) domain found in transcription factor-like 5 protein (TCFL5) and similar proteins

    3. XM_037982570.1 → XP_037838498.1  transcription factor-like 5 protein isoform X4

      Conserved Domains (1) summary
      cd18909
      Location:397 → 456
      bHLH_TCFL5; basic helix-loop-helix (bHLH) domain found in transcription factor-like 5 protein (TCFL5) and similar proteins

    4. XM_008011626.2 → XP_008009817.2  transcription factor-like 5 protein isoform X5

      Conserved Domains (1) summary
      cd18909
      Location:397 → 456
      bHLH_TCFL5; basic helix-loop-helix (bHLH) domain found in transcription factor-like 5 protein (TCFL5) and similar proteins

    5. XM_037982569.1 → XP_037838497.1  transcription factor-like 5 protein isoform X3

      Conserved Domains (1) summary
      cd18909
      Location:397 → 456
      bHLH_TCFL5; basic helix-loop-helix (bHLH) domain found in transcription factor-like 5 protein (TCFL5) and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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