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    LOC6578792 activating signal cointegrator 1 complex subunit 1 [ Drosophila mojavensis ]

    Gene ID: 6578792, updated on 10-May-2024

    Summary

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    Gene symbol
    LOC6578792
    Gene description
    activating signal cointegrator 1 complex subunit 1
    Locus tag
    Dmoj_GI19460
    See related
    EnsemblRapid:LOC6578792
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Drosophila mojavensis
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila
    Also known as
    GI19460; GI19460-PA; GI19460-PB
    Orthologs
    fruit fly all
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    Genomic context

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    See LOC6578792 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    102 current ASM1815372v1 (GCF_018153725.1) Unplaced Scaffold NW_025318906.1 (5101483..5103392, complement)
    101 previous assembly dmoj_caf1 (GCF_000005175.2) Unplaced Scaffold NW_001979114.1 (5046405..5048109, complement)

    NW_025318906.1Genomic Context describing neighboring genes Neighboring gene DENN domain-containing protein 1B Neighboring gene CLIP domain-containing serine protease 2 Neighboring gene uncharacterized LOC116804122 Neighboring gene putative methyltransferase C9orf114 homolog Neighboring gene palmitoyltransferase ZDHHC20-B

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA alkylation repair IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    activating signal cointegrator 1 complex subunit 1
    Names
    Dmoj\GI19460
    Dmoj\GI19460-PA
    Dmoj\GI19460-PB
    dmoj_GLEANR_4393

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Drosophila mojavensis Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM1815372v1

    Genomic

    1. NW_025318906.1 Reference ASM1815372v1

      Range
      5101483..5103392 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_044010963.1 → XP_043866898.1  activating signal cointegrator 1 complex subunit 1 isoform X2

      UniProtKB/TrEMBL
      A0A0Q9X7C3
      Related
      XP_043866898.1, XM_044010963.1
      Conserved Domains (2) summary
      pfam10469
      Location:136 → 340
      AKAP7_NLS; AKAP7 2'5' RNA ligase-like domain
      cd22419
      Location:61 → 127
      KH-I_ASCC1; type I K homology (KH) RNA-binding domain found in activating signal cointegrator 1 complex subunit 1 (ASCC1) and similar proteins

    2. XM_002004662.4 → XP_002004698.1  activating signal cointegrator 1 complex subunit 1 isoform X1

      See identical proteins and their annotated locations for XP_002004698.1

      UniProtKB/TrEMBL
      B4KU56
      Related
      XP_002004698.1, XM_002004662.4
      Conserved Domains (3) summary
      PLN00108
      Location:149 → 352
      PLN00108; unknown protein; Provisional
      cd02394
      Location:77 → 136
      vigilin_like_KH; K homology RNA-binding domain_vigilin_like. The vigilin family is a large and extended family of multiple KH-domain proteins, including vigilin, also called high density lipoprotein binding protien (HBP), fungal Scp160 and bicaudal-C. Yeast Scp160p has ...
      pfam10469
      Location:148 → 352
      AKAP7_NLS; AKAP7 2'5' RNA ligase-like domain
    Nucleotide Protein
    Heading Accession and Version

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