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    lig ubiquitin-associated protein-like lingerer [ Glossina fuscipes ]

    Gene ID: 119636870, updated on 16-Oct-2024

    Summary

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    Gene symbol
    lig
    Gene description
    ubiquitin-associated protein-like lingerer
    See related
    VectorBase:GQX74_009781
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Glossina fuscipes
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Hippoboscoidea; Glossinidae; Glossina
    Orthologs
    fruit fly all
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    Genomic context

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    See lig in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    100 current Yale_Gfus_2 (GCF_014805625.1) Unplaced Scaffold NW_023998426.1 (382249..398965)

    NW_023998426.1Genomic Context describing neighboring genes Neighboring gene receptor expression-enhancing protein 5-like Neighboring gene dynein regulatory complex protein 8 Neighboring gene mitochondrial ribosomal protein S16 Neighboring gene vacuolar protein sorting 28 Neighboring gene sugar transporter SWEET1 Neighboring gene sugar transporter 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_023998426 Unplaced Scaffold Reference Yale_Gfus_2

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein lingerer

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Glossina fuscipes Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Yale_Gfus_2

    Genomic

    1. NW_023998426.1 Reference Yale_Gfus_2

      Range
      382249..398965
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038032536.1 → XP_037888464.1  protein lingerer isoform X1

      UniProtKB/TrEMBL
      A0A9C5Z2U9
      Conserved Domains (3) summary
      cd14277
      Location:73 → 110
      UBA_UBP2_like; UBA domain found in ubiquitin-associated protein 2 (UBAP-2) like proteins
      pfam12478
      Location:561 → 592
      DUF3697; Ubiquitin-associated protein 2
      NF033849
      Location:708 → 968
      ser_rich_anae_1; serine-rich protein

    2. XM_038032538.1 → XP_037888466.1  protein lingerer isoform X3

      UniProtKB/TrEMBL
      A0A9C6DJP4
      Conserved Domains (3) summary
      cd14277
      Location:73 → 110
      UBA_UBP2_like; UBA domain found in ubiquitin-associated protein 2 (UBAP-2) like proteins
      pfam12478
      Location:561 → 592
      DUF3697; Ubiquitin-associated protein 2
      NF033849
      Location:708 → 968
      ser_rich_anae_1; serine-rich protein

    3. XM_038032537.1 → XP_037888465.1  protein lingerer isoform X2

      UniProtKB/TrEMBL
      A0A9C5YU70
      Conserved Domains (3) summary
      cd14277
      Location:73 → 110
      UBA_UBP2_like; UBA domain found in ubiquitin-associated protein 2 (UBAP-2) like proteins
      pfam12478
      Location:561 → 592
      DUF3697; Ubiquitin-associated protein 2
      NF033849
      Location:708 → 962
      ser_rich_anae_1; serine-rich protein

    4. XM_038032539.1 → XP_037888467.1  protein lingerer isoform X4

      UniProtKB/TrEMBL
      A0A9C6DRF5
      Conserved Domains (2) summary
      cd14277
      Location:73 → 110
      UBA_UBP2_like; UBA domain found in ubiquitin-associated protein 2 (UBAP-2) like proteins
      pfam12478
      Location:561 → 592
      DUF3697; Ubiquitin-associated protein 2

    5. XM_038032540.1 → XP_037888468.1  protein lingerer isoform X5

      UniProtKB/TrEMBL
      A0A9C6DRK9
      Conserved Domains (2) summary
      cd14277
      Location:73 → 110
      UBA_UBP2_like; UBA domain found in ubiquitin-associated protein 2 (UBAP-2) like proteins
      pfam12478
      Location:561 → 592
      DUF3697; Ubiquitin-associated protein 2
    Nucleotide Protein
    Heading Accession and Version

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