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    LTV1 LTV1 ribosome biogenesis factor [ Drosophila willistoni ]

    Gene ID: 6652198, updated on 24-May-2024

    Summary

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    Gene symbol
    LTV1
    Gene description
    LTV1 ribosome biogenesis factor
    Locus tag
    Dwil_GK23272
    See related
    EnsemblRapid:LOC6652198
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Drosophila willistoni
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    GK23272; GK23272-PA
    Orthologs
    fruit fly all
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    Genomic context

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    See LTV1 in Genome Data Viewer
    Location:
    chromosome: 2L
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    102 current UCI_dwil_1.1 (GCF_018902025.1) 2L Unlocalized Scaffold NW_025814047.1 (8251041..8252759, complement)
    101 previous assembly dwil_caf1 (GCF_000005925.1) Unplaced Scaffold NW_002032903.1 (4048969..4050658)

    NW_025814047.1Genomic Context describing neighboring genes Neighboring gene periodic tryptophan protein 2 homolog Neighboring gene glycine receptor subunit alpha alkaliphile Neighboring gene Rab GTPase-binding effector protein rabaptin-5 Neighboring gene trehalase

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in ribosomal small subunit biogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in ribosomal small subunit export from nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of preribosome, small subunit precursor IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein LTV1 homolog
    Names
    Dwil\GK23272
    Dwil\GK23272-PA
    dwil_GLEANR_6593

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Drosophila willistoni Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCI_dwil_1.1

    Genomic

    1. NW_025814047.1 Reference UCI_dwil_1.1

      Range
      8251041..8252759 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002074795.4 → XP_002074831.1  protein LTV1 homolog

      See identical proteins and their annotated locations for XP_002074831.1

      UniProtKB/TrEMBL
      B4NN78
      Related
      XP_002074831.1, XM_002074795.4
      Conserved Domains (1) summary
      pfam04180
      Location:10 → 462
      LTV; Low temperature viability protein
    Nucleotide Protein
    Heading Accession and Version

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