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    PLS3 plastin 3 [ Motacilla alba alba ]

    Gene ID: 119712929, updated on 3-Aug-2024

    Summary

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    Gene symbol
    PLS3
    Gene description
    plastin 3
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Motacilla alba alba (sub-species: alba)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Passeroidea; Motacillidae; Motacilla
    Orthologs
    human mouse all
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    Genomic context

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    See PLS3 in Genome Data Viewer
    Location:
    chromosome: 4A
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    100 current Motacilla_alba_V1.0_pri (GCF_015832195.1) 4A NC_052045.1 (7722964..7772952)

    Chromosome 4A - NC_052045.1Genomic Context describing neighboring genes Neighboring gene FERM domain containing 7 Neighboring gene serine/threonine kinase 26 Neighboring gene nyctalopin-like Neighboring gene angiotensin II receptor type 2 Neighboring gene solute carrier family 6 member 14

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_052045.1 Chromosome 4A Reference Motacilla_alba_V1.0_pri Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables actin filament binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in actin filament bundle assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in actin filament network formation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in actin filament IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in actin filament bundle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    plastin-3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Motacilla alba alba Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Motacilla_alba_V1.0_pri Primary Assembly

    Genomic

    1. NC_052045.1 Reference Motacilla_alba_V1.0_pri Primary Assembly

      Range
      7722964..7772952
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038164812.1 → XP_038020740.1  plastin-3 isoform X1

      UniProtKB/TrEMBL
      A0A7K5CI10
      Conserved Domains (5) summary
      cd00051
      Location:14 → 80
      EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
      cd21292
      Location:99 → 243
      CH_PLS_rpt1; first calponin homology (CH) domain found in the plastin family
      cd21328
      Location:252 → 382
      CH_PLS3_rpt2; second calponin homology (CH) domain found in plastin-3
      cd21331
      Location:384 → 517
      CH_PLS3_rpt3; third calponin homology (CH) domain found in plastin-3
      cd21334
      Location:526 → 637
      CH_PLS3_rpt4; fourth calponin homology (CH) domain found in plastin-3

    2. XM_038164818.1 → XP_038020746.1  plastin-3 isoform X2

      UniProtKB/TrEMBL
      A0A7K5CI10
      Conserved Domains (5) summary
      cd00051
      Location:14 → 80
      EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
      cd21292
      Location:99 → 243
      CH_PLS_rpt1; first calponin homology (CH) domain found in the plastin family
      cd21328
      Location:252 → 373
      CH_PLS3_rpt2; second calponin homology (CH) domain found in plastin-3
      cd21331
      Location:375 → 508
      CH_PLS3_rpt3; third calponin homology (CH) domain found in plastin-3
      cd21334
      Location:517 → 628
      CH_PLS3_rpt4; fourth calponin homology (CH) domain found in plastin-3

    3. XM_038164815.1 → XP_038020743.1  plastin-3 isoform X1

      UniProtKB/TrEMBL
      A0A7K5CI10
      Conserved Domains (5) summary
      cd00051
      Location:14 → 80
      EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
      cd21292
      Location:99 → 243
      CH_PLS_rpt1; first calponin homology (CH) domain found in the plastin family
      cd21328
      Location:252 → 382
      CH_PLS3_rpt2; second calponin homology (CH) domain found in plastin-3
      cd21331
      Location:384 → 517
      CH_PLS3_rpt3; third calponin homology (CH) domain found in plastin-3
      cd21334
      Location:526 → 637
      CH_PLS3_rpt4; fourth calponin homology (CH) domain found in plastin-3

    4. XM_038164814.1 → XP_038020742.1  plastin-3 isoform X1

      UniProtKB/TrEMBL
      A0A7K5CI10
      Conserved Domains (5) summary
      cd00051
      Location:14 → 80
      EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
      cd21292
      Location:99 → 243
      CH_PLS_rpt1; first calponin homology (CH) domain found in the plastin family
      cd21328
      Location:252 → 382
      CH_PLS3_rpt2; second calponin homology (CH) domain found in plastin-3
      cd21331
      Location:384 → 517
      CH_PLS3_rpt3; third calponin homology (CH) domain found in plastin-3
      cd21334
      Location:526 → 637
      CH_PLS3_rpt4; fourth calponin homology (CH) domain found in plastin-3

    5. XM_038164813.1 → XP_038020741.1  plastin-3 isoform X1

      UniProtKB/TrEMBL
      A0A7K5CI10
      Conserved Domains (5) summary
      cd00051
      Location:14 → 80
      EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
      cd21292
      Location:99 → 243
      CH_PLS_rpt1; first calponin homology (CH) domain found in the plastin family
      cd21328
      Location:252 → 382
      CH_PLS3_rpt2; second calponin homology (CH) domain found in plastin-3
      cd21331
      Location:384 → 517
      CH_PLS3_rpt3; third calponin homology (CH) domain found in plastin-3
      cd21334
      Location:526 → 637
      CH_PLS3_rpt4; fourth calponin homology (CH) domain found in plastin-3

    6. XM_038164817.1 → XP_038020745.1  plastin-3 isoform X1

      UniProtKB/TrEMBL
      A0A7K5CI10
      Conserved Domains (5) summary
      cd00051
      Location:14 → 80
      EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
      cd21292
      Location:99 → 243
      CH_PLS_rpt1; first calponin homology (CH) domain found in the plastin family
      cd21328
      Location:252 → 382
      CH_PLS3_rpt2; second calponin homology (CH) domain found in plastin-3
      cd21331
      Location:384 → 517
      CH_PLS3_rpt3; third calponin homology (CH) domain found in plastin-3
      cd21334
      Location:526 → 637
      CH_PLS3_rpt4; fourth calponin homology (CH) domain found in plastin-3
    Nucleotide Protein
    Heading Accession and Version

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