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    LOC119730168 EF-hand calcium-binding domain-containing protein 5-like [ Patiria miniata (bat star) ]

    Gene ID: 119730168, updated on 11-Jan-2024

    Summary

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    Gene symbol
    LOC119730168
    Gene description
    EF-hand calcium-binding domain-containing protein 5-like
    See related
    EnsemblRapid:LOC119730168
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Patiria miniata
    Lineage
    Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Asterozoa; Asteroidea; Valvatacea; Valvatida; Asterinidae; Patiria
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    Genomic context

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    See LOC119730168 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    24
    Annotation release Status Assembly Chr Location
    100 current ASM1570657v1 (GCF_015706575.1) Unplaced Scaffold NW_024037061.1 (11629550..11677723, complement)

    NW_024037061.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC119730173 Neighboring gene uncharacterized LOC119730172 Neighboring gene ficolin-2-like Neighboring gene protein phosphatase Slingshot homolog 2-like Neighboring gene importin subunit alpha-2-like Neighboring gene U2 spliceosomal RNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_024037061 Unplaced Scaffold Reference ASM1570657v1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    EF-hand calcium-binding domain-containing protein 5-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Patiria miniata Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM1570657v1

    Genomic

    1. NW_024037061.1 Reference ASM1570657v1

      Range
      11629550..11677723 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038202951.1 → XP_038058879.1  EF-hand calcium-binding domain-containing protein 5-like isoform X1

      UniProtKB/TrEMBL
      A0A914A4Z5
      Related
      XP_038058879.1, XM_038202951.1
      Conserved Domains (5) summary
      PRK10811
      Location:509 → 818
      rne; ribonuclease E; Reviewed
      cd00051
      Location:912 → 974
      EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
      pfam05186
      Location:160 → 213
      Dpy-30; Dpy-30 motif
      cl08302
      Location:883 → 938
      EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
      cl21515
      Location:1094 → 1200
      GAF; GAF domain

    2. XM_038202952.1 → XP_038058880.1  EF-hand calcium-binding domain-containing protein 5-like isoform X2

      UniProtKB/TrEMBL
      A0A914A583
      Related
      XP_038058880.1, XM_038202952.1
      Conserved Domains (4) summary
      PTZ00121
      Location:509 → 967
      PTZ00121; MAEBL; Provisional
      PRK13108
      Location:507 → 676
      PRK13108; prolipoprotein diacylglyceryl transferase; Reviewed
      pfam05186
      Location:160 → 213
      Dpy-30; Dpy-30 motif
      cl21515
      Location:1090 → 1196
      GAF; GAF domain

    3. XM_038202955.1 → XP_038058883.1  EF-hand calcium-binding domain-containing protein 5-like isoform X5

      UniProtKB/TrEMBL
      A0A914A503
      Related
      XP_038058883.1, XM_038202955.1
      Conserved Domains (5) summary
      PRK10811
      Location:509 → 818
      rne; ribonuclease E; Reviewed
      cd00051
      Location:912 → 974
      EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
      pfam05186
      Location:160 → 213
      Dpy-30; Dpy-30 motif
      cl08302
      Location:883 → 938
      EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
      cl21515
      Location:1094 → 1186
      GAF; GAF domain

    4. XM_038202953.1 → XP_038058881.1  EF-hand calcium-binding domain-containing protein 5-like isoform X3

      UniProtKB/TrEMBL
      A0A914A651
      Related
      XP_038058881.1, XM_038202953.1
      Conserved Domains (5) summary
      PRK10811
      Location:509 → 818
      rne; ribonuclease E; Reviewed
      cd00051
      Location:912 → 974
      EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
      pfam05186
      Location:160 → 213
      Dpy-30; Dpy-30 motif
      cl08302
      Location:883 → 938
      EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
      cl21515
      Location:1094 → 1186
      GAF; GAF domain

    5. XM_038202954.1 → XP_038058882.1  EF-hand calcium-binding domain-containing protein 5-like isoform X4

      UniProtKB/TrEMBL
      A0A914A4V7
      Related
      XP_038058882.1, XM_038202954.1
      Conserved Domains (5) summary
      PRK10811
      Location:509 → 818
      rne; ribonuclease E; Reviewed
      cd00051
      Location:912 → 974
      EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
      pfam05186
      Location:160 → 213
      Dpy-30; Dpy-30 motif
      cl08302
      Location:883 → 938
      EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
      cl21515
      Location:1094 → 1200
      GAF; GAF domain

    6. XM_038202950.1 → XP_038058878.1  EF-hand calcium-binding domain-containing protein 5-like isoform X1

      UniProtKB/TrEMBL
      A0A914A4Z5
      Related
      XP_038058878.1, XM_038202950.1
      Conserved Domains (5) summary
      PRK10811
      Location:509 → 818
      rne; ribonuclease E; Reviewed
      cd00051
      Location:912 → 974
      EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
      pfam05186
      Location:160 → 213
      Dpy-30; Dpy-30 motif
      cl08302
      Location:883 → 938
      EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
      cl21515
      Location:1094 → 1200
      GAF; GAF domain
    Nucleotide Protein
    Heading Accession and Version

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