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    LOC6560449 immunoglobulin superfamily member 10 [ Drosophila grimshawi ]

    Gene ID: 6560449, updated on 10-May-2024

    Summary

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    Gene symbol
    LOC6560449
    Gene description
    immunoglobulin superfamily member 10
    Locus tag
    Dgri_GH21362
    See related
    EnsemblRapid:LOC6560449
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Drosophila grimshawi
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Hawaiian Drosophila
    Also known as
    GH21362; GH21362-PA
    Orthologs
    fruit fly all
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    Genomic context

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    See LOC6560449 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    103 current ASM1815329v1 (GCF_018153295.1) Unplaced Scaffold NW_025062889.1 (10821456..10824518)
    102 previous assembly dgri_caf1 (GCF_000005155.2) Unplaced Scaffold NW_001961673.1 (6799828..6802890)

    NW_025062889.1Genomic Context describing neighboring genes Neighboring gene transfer RNA lysine (anticodon UUU) Neighboring gene RNA polymerase-associated protein Rtf1 Neighboring gene uncharacterized LOC6559839 Neighboring gene protein amalgam

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables axon guidance receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in synapse organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in axon IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in neuronal cell body IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    immunoglobulin superfamily member 10
    Names
    Dgri\GH21362
    Dgri\GH21362-PA
    dgri_GLEANR_5530

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Drosophila grimshawi Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM1815329v1

    Genomic

    1. NW_025062889.1 Reference ASM1815329v1

      Range
      10821456..10824518
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001986390.2 → XP_001986426.1  immunoglobulin superfamily member 10

      See identical proteins and their annotated locations for XP_001986426.1

      UniProtKB/TrEMBL
      B4J8M6
      Related
      XP_001986426.1, XM_001986390.2
      Conserved Domains (5) summary
      cd00096
      Location:240 → 321
      Ig; Immunoglobulin domain
      smart00410
      Location:39 → 116
      IG_like; Immunoglobulin like
      cd00063
      Location:339 → 431
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam07679
      Location:223 → 323
      I-set; Immunoglobulin I-set domain
      cl11960
      Location:146 → 218
      Ig; Immunoglobulin domain
    Nucleotide Protein
    Heading Accession and Version

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