U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Protein

    • Showing Current items.

    LOC119979765 cytosolic carboxypeptidase 3-like [ Scyliorhinus canicula (smaller spotted catshark) ]

    Gene ID: 119979765, updated on 7-Dec-2023

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC119979765
    Gene description
    cytosolic carboxypeptidase 3-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Scyliorhinus canicula
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Elasmobranchii; Galeomorphii; Galeoidea; Carcharhiniformes; Scyliorhinidae; Scyliorhinus
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC119979765 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    100 current sScyCan1.1 (GCF_902713615.1) 2 NC_052147.1 (6736031..7004984, complement)

    Chromosome 2 - NC_052147.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC119979694 Neighboring gene G-protein coupled receptor 4-like Neighboring gene uncharacterized LOC119962496 Neighboring gene HHIP-like 1 Neighboring gene transfer RNA glycine (anticodon GCC) Neighboring gene calmin-like Neighboring gene dicer 1, ribonuclease type III Neighboring gene uncharacterized LOC119950597 Neighboring gene goosecoid

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_052147.1 Chromosome 2 Reference sScyCan1.1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables metallocarboxypeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in proteolysis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    cytosolic carboxypeptidase 3-like

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Scyliorhinus canicula Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference sScyCan1.1 Primary Assembly

    Genomic

    1. NC_052147.1 Reference sScyCan1.1 Primary Assembly

      Range
      6736031..7004984 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038773113.1 → XP_038629041.1  cytosolic carboxypeptidase 3-like isoform X5

      Conserved Domains (2) summary
      cd06907
      Location:344 → 596
      M14_AGBL2-3_like; Peptidase M14-like domain of ATP/GTP binding protein AGBL-2 and AGBL-3, and related proteins
      pfam18027
      Location:196 → 322
      Pepdidase_M14_N; Cytosolic carboxypeptidase N-terminal domain

    2. XM_038773093.1 → XP_038629021.1  cytosolic carboxypeptidase 3-like isoform X3

      Conserved Domains (2) summary
      cd06907
      Location:370 → 622
      M14_AGBL2-3_like; Peptidase M14-like domain of ATP/GTP binding protein AGBL-2 and AGBL-3, and related proteins
      pfam18027
      Location:238 → 348
      Pepdidase_M14_N; Cytosolic carboxypeptidase N-terminal domain

    3. XM_038822401.1 → XP_038678329.1  cytosolic carboxypeptidase 3-like isoform X1

      Conserved Domains (2) summary
      cd06907
      Location:392 → 644
      M14_AGBL2-3_like; Peptidase M14-like domain of ATP/GTP binding protein AGBL-2 and AGBL-3, and related proteins
      pfam18027
      Location:244 → 370
      Pepdidase_M14_N; Cytosolic carboxypeptidase N-terminal domain

    4. XM_038773123.1 → XP_038629051.1  cytosolic carboxypeptidase 3-like isoform X5

      Conserved Domains (2) summary
      cd06907
      Location:344 → 596
      M14_AGBL2-3_like; Peptidase M14-like domain of ATP/GTP binding protein AGBL-2 and AGBL-3, and related proteins
      pfam18027
      Location:196 → 322
      Pepdidase_M14_N; Cytosolic carboxypeptidase N-terminal domain

    5. XM_038773140.1 → XP_038629068.1  cytosolic carboxypeptidase 3-like isoform X5

      Conserved Domains (2) summary
      cd06907
      Location:344 → 596
      M14_AGBL2-3_like; Peptidase M14-like domain of ATP/GTP binding protein AGBL-2 and AGBL-3, and related proteins
      pfam18027
      Location:196 → 322
      Pepdidase_M14_N; Cytosolic carboxypeptidase N-terminal domain

    6. XM_038773104.1 → XP_038629032.1  cytosolic carboxypeptidase 3-like isoform X4

      Conserved Domains (2) summary
      cd06907
      Location:358 → 610
      M14_AGBL2-3_like; Peptidase M14-like domain of ATP/GTP binding protein AGBL-2 and AGBL-3, and related proteins
      pfam18027
      Location:210 → 336
      Pepdidase_M14_N; Cytosolic carboxypeptidase N-terminal domain

    7. XM_038773078.1 → XP_038629006.1  cytosolic carboxypeptidase 3-like isoform X1

      Conserved Domains (2) summary
      cd06907
      Location:392 → 644
      M14_AGBL2-3_like; Peptidase M14-like domain of ATP/GTP binding protein AGBL-2 and AGBL-3, and related proteins
      pfam18027
      Location:244 → 370
      Pepdidase_M14_N; Cytosolic carboxypeptidase N-terminal domain

    8. XM_038773087.1 → XP_038629015.1  cytosolic carboxypeptidase 3-like isoform X2

      Conserved Domains (2) summary
      cd06907
      Location:392 → 644
      M14_AGBL2-3_like; Peptidase M14-like domain of ATP/GTP binding protein AGBL-2 and AGBL-3, and related proteins
      pfam18027
      Location:244 → 370
      Pepdidase_M14_N; Cytosolic carboxypeptidase N-terminal domain

    9. XM_038773147.1 → XP_038629075.1  cytosolic carboxypeptidase 3-like isoform X7

      Conserved Domains (2) summary
      pfam18027
      Location:244 → 370
      Pepdidase_M14_N; Cytosolic carboxypeptidase N-terminal domain
      cl11393
      Location:392 → 520
      Peptidase_M14_like; M14 family of metallocarboxypeptidases and related proteins

    10. XM_038773153.1 → XP_038629081.1  cytosolic carboxypeptidase 3-like isoform X7

      Conserved Domains (2) summary
      pfam18027
      Location:244 → 370
      Pepdidase_M14_N; Cytosolic carboxypeptidase N-terminal domain
      cl11393
      Location:392 → 520
      Peptidase_M14_like; M14 family of metallocarboxypeptidases and related proteins

    11. XM_038773132.1 → XP_038629060.1  cytosolic carboxypeptidase 3-like isoform X6

      Conserved Domains (2) summary
      cd06907
      Location:392 → 644
      M14_AGBL2-3_like; Peptidase M14-like domain of ATP/GTP binding protein AGBL-2 and AGBL-3, and related proteins
      pfam18027
      Location:244 → 370
      Pepdidase_M14_N; Cytosolic carboxypeptidase N-terminal domain
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases