U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Protein

    • Showing Current items.

    slmapa sarcolemma associated protein a [ Scyliorhinus canicula (smaller spotted catshark) ]

    Gene ID: 119974033, updated on 21-Mar-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    slmapa
    Gene description
    sarcolemma associated protein a
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Scyliorhinus canicula
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Elasmobranchii; Galeomorphii; Galeoidea; Carcharhiniformes; Scyliorhinidae; Scyliorhinus
    Orthologs
    human zebrafish all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See slmapa in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    30
    Annotation release Status Assembly Chr Location
    100 current sScyCan1.1 (GCF_902713615.1) 11 NC_052156.1 (41983086..42270166)

    Chromosome 11 - NC_052156.1Genomic Context describing neighboring genes Neighboring gene ADP-ribosylation factor 4-like Neighboring gene DENN/MADD domain containing 6Aa Neighboring gene U2 spliceosomal RNA Neighboring gene uncharacterized LOC119974034 Neighboring gene filamin B, like

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_052156.1 Chromosome 11 Reference sScyCan1.1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in acrosome assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in single fertilization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in acrosomal membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    sarcolemma associated protein a

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Scyliorhinus canicula Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference sScyCan1.1 Primary Assembly

    Genomic

    1. NC_052156.1 Reference sScyCan1.1 Primary Assembly

      Range
      41983086..42270166
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038812836.1 → XP_038668764.1  sarcolemma associated protein a isoform X1

      Conserved Domains (3) summary
      COG1196
      Location:163 → 881
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      cd00060
      Location:14 → 108
      FHA; Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins ...
      cd21911
      Location:165 → 227
      CC1_SLMAP; first coiled-coil (CC1) domain found in Sarcolemmal membrane-associated protein

    2. XM_038812840.1 → XP_038668768.1  sarcolemma associated protein a isoform X4

      Conserved Domains (3) summary
      COG1196
      Location:163 → 864
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      cd00060
      Location:14 → 108
      FHA; Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins ...
      cd21911
      Location:165 → 227
      CC1_SLMAP; first coiled-coil (CC1) domain found in Sarcolemmal membrane-associated protein

    3. XM_038812844.1 → XP_038668772.1  sarcolemma associated protein a isoform X8

      Conserved Domains (3) summary
      COG1196
      Location:163 → 842
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      cd00060
      Location:14 → 108
      FHA; Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins ...
      cd21911
      Location:165 → 227
      CC1_SLMAP; first coiled-coil (CC1) domain found in Sarcolemmal membrane-associated protein

    4. XM_038812853.1 → XP_038668781.1  sarcolemma associated protein a isoform X15

      Conserved Domains (3) summary
      COG1196
      Location:161 → 858
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      cd00060
      Location:14 → 108
      FHA; Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins ...
      cd21911
      Location:163 → 225
      CC1_SLMAP; first coiled-coil (CC1) domain found in Sarcolemmal membrane-associated protein

    5. XM_038812852.1 → XP_038668780.1  sarcolemma associated protein a isoform X14

      Conserved Domains (3) summary
      COG1196
      Location:161 → 841
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      cd00060
      Location:14 → 108
      FHA; Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins ...
      cd21911
      Location:163 → 225
      CC1_SLMAP; first coiled-coil (CC1) domain found in Sarcolemmal membrane-associated protein

    6. XM_038812837.1 → XP_038668765.1  sarcolemma associated protein a isoform X2

      Conserved Domains (3) summary
      COG1196
      Location:163 → 881
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      cd00060
      Location:14 → 108
      FHA; Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins ...
      cd21911
      Location:165 → 227
      CC1_SLMAP; first coiled-coil (CC1) domain found in Sarcolemmal membrane-associated protein

    7. XM_038812843.1 → XP_038668771.1  sarcolemma associated protein a isoform X7

      Conserved Domains (3) summary
      COG1196
      Location:163 → 860
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      cd00060
      Location:14 → 108
      FHA; Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins ...
      cd21911
      Location:165 → 227
      CC1_SLMAP; first coiled-coil (CC1) domain found in Sarcolemmal membrane-associated protein

    8. XM_038812838.1 → XP_038668766.1  sarcolemma associated protein a isoform X3

      Conserved Domains (3) summary
      COG1196
      Location:161 → 879
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      cd00060
      Location:14 → 108
      FHA; Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins ...
      cd21911
      Location:163 → 225
      CC1_SLMAP; first coiled-coil (CC1) domain found in Sarcolemmal membrane-associated protein

    9. XM_038812842.1 → XP_038668770.1  sarcolemma associated protein a isoform X6

      Conserved Domains (3) summary
      COG1196
      Location:161 → 862
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      cd00060
      Location:14 → 108
      FHA; Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins ...
      cd21911
      Location:163 → 225
      CC1_SLMAP; first coiled-coil (CC1) domain found in Sarcolemmal membrane-associated protein

    10. XM_038812841.1 → XP_038668769.1  sarcolemma associated protein a isoform X5

      Conserved Domains (3) summary
      COG1196
      Location:163 → 885
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      cd00060
      Location:14 → 108
      FHA; Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins ...
      cd21911
      Location:165 → 227
      CC1_SLMAP; first coiled-coil (CC1) domain found in Sarcolemmal membrane-associated protein

    11. XM_038812845.1 → XP_038668773.1  sarcolemma associated protein a isoform X9

      Conserved Domains (2) summary
      COG1196
      Location:33 → 751
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      cd21911
      Location:35 → 97
      CC1_SLMAP; first coiled-coil (CC1) domain found in Sarcolemmal membrane-associated protein

    12. XM_038812846.1 → XP_038668774.1  sarcolemma associated protein a isoform X10

      Conserved Domains (1) summary
      TIGR02169
      Location:6 → 363
      SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type

    13. XM_038812847.1 → XP_038668775.1  sarcolemma associated protein a isoform X10

      Conserved Domains (1) summary
      TIGR02169
      Location:6 → 363
      SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type

    14. XM_038812849.1 → XP_038668777.1  sarcolemma associated protein a isoform X12

      Conserved Domains (1) summary
      TIGR02169
      Location:24 → 342
      SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type

    15. XM_038812848.1 → XP_038668776.1  sarcolemma associated protein a isoform X11

      Conserved Domains (1) summary
      TIGR02169
      Location:3 → 343
      SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type

    16. XM_038812851.1 → XP_038668779.1  sarcolemma associated protein a isoform X13

      Conserved Domains (1) summary
      TIGR02169
      Location:4 → 322
      SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases