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    LOC489252 tropomyosin alpha-3 chain-like [ Canis lupus familiaris (dog) ]

    Gene ID: 489252, updated on 22-Jan-2024

    Summary

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    Gene symbol
    LOC489252
    Gene description
    tropomyosin alpha-3 chain-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
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    Genomic context

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    See LOC489252 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 4 NC_051808.1 (82315055..82315818)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 4 NC_006586.4 (81344831..81345594)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 4 NC_049225.1 (82795300..82796063)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 4 NC_049264.1 (81843180..81843940)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 4 NC_049745.1 (82101405..82102168)

    Chromosome 4 - NC_051808.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC119871652 Neighboring gene uncharacterized LOC111095737 Neighboring gene uncharacterized LOC102156814 Neighboring gene cadherin 12 Neighboring gene uncharacterized LOC111095663 Neighboring gene uncharacterized LOC111095662

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables actin filament binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in actin filament organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in muscle contraction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in actin filament IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    LOW QUALITY PROTEIN: tropomyosin alpha-3 chain-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051808.1 Reference ROS_Cfam_1.0

      Range
      82315055..82315818
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038662398.1 → XP_038518326.1  LOW QUALITY PROTEIN: tropomyosin alpha-3 chain-like

      Conserved Domains (1) summary
      pfam00261
      Location:13 → 246
      Tropomyosin

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049264.1 Alternate UMICH_Zoey_3.1

      Range
      81843180..81843940
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038474352.1 → XP_038330280.1  LOW QUALITY PROTEIN: tropomyosin alpha-3 chain-like

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049745.1 Alternate UNSW_CanFamBas_1.0

      Range
      82101405..82102168
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038598089.1 → XP_038454017.1  LOW QUALITY PROTEIN: tropomyosin alpha-3 chain-like

      Conserved Domains (1) summary
      pfam00261
      Location:13 → 246
      Tropomyosin

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049225.1 Alternate UU_Cfam_GSD_1.0

      Range
      82795300..82796063
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038535476.1 → XP_038391404.1  LOW QUALITY PROTEIN: tropomyosin alpha-3 chain-like

      Conserved Domains (1) summary
      pfam00261
      Location:13 → 246
      Tropomyosin

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006586.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      81344831..81345594
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038501943.1 → XP_038357871.1  LOW QUALITY PROTEIN: tropomyosin alpha-3 chain-like

      Conserved Domains (1) summary
      pfam00261
      Location:13 → 246
      Tropomyosin
    Nucleotide Protein
    Heading Accession and Version

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