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    LOC479379 glucose-6-phosphate isomerase-like [ Canis lupus familiaris (dog) ]

    Gene ID: 479379, updated on 22-Jan-2024

    Summary

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    Gene symbol
    LOC479379
    Gene description
    glucose-6-phosphate isomerase-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
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    Genomic context

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    See LOC479379 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 4 NC_051808.1 (82004289..82014371, complement)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 4 NC_006586.4 (81034709..81044796, complement)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 4 NC_049225.1 (82485587..82495670, complement)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 4 NC_049264.1 (81532733..81542732, complement)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 4 NC_049745.1 (81791917..81801998, complement)

    Chromosome 4 - NC_051808.1Genomic Context describing neighboring genes Neighboring gene cyclin-dependent kinases regulatory subunit 2-like Neighboring gene nuclear transcription factor Y subunit beta-like Neighboring gene uncharacterized LOC119871652 Neighboring gene uncharacterized LOC111095737

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables carbohydrate derivative binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables glucose-6-phosphate isomerase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables monosaccharide binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in gluconeogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in glucose 6-phosphate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in glycolytic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    LOW QUALITY PROTEIN: glucose-6-phosphate isomerase-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051808.1 Reference ROS_Cfam_1.0

      Range
      82004289..82014371 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038662397.1 → XP_038518325.1  LOW QUALITY PROTEIN: glucose-6-phosphate isomerase-like isoform X1

      UniProtKB/TrEMBL
      A0A8C0SM01
      Conserved Domains (1) summary
      PRK00179
      Location:87 → 634
      pgi; glucose-6-phosphate isomerase; Reviewed

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049264.1 Alternate UMICH_Zoey_3.1

      Range
      81532733..81542732 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038474351.1 → XP_038330279.1  LOW QUALITY PROTEIN: glucose-6-phosphate isomerase-like isoform X1

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049745.1 Alternate UNSW_CanFamBas_1.0

      Range
      81791917..81801998 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038598088.1 → XP_038454016.1  LOW QUALITY PROTEIN: glucose-6-phosphate isomerase-like isoform X1

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049225.1 Alternate UU_Cfam_GSD_1.0

      Range
      82485587..82495670 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038535475.1 → XP_038391403.1  LOW QUALITY PROTEIN: glucose-6-phosphate isomerase-like isoform X2

      UniProtKB/TrEMBL
      A0A8C0SM01

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006586.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      81034709..81044796 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038501932.1 → XP_038357860.1  LOW QUALITY PROTEIN: glucose-6-phosphate isomerase-like isoform X1

      UniProtKB/TrEMBL
      A0A8C0SM01
      Conserved Domains (1) summary
      PRK00179
      Location:87 → 634
      pgi; glucose-6-phosphate isomerase; Reviewed
    Nucleotide Protein
    Heading Accession and Version

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