LOC100683001 small integral membrane protein 10-like protein 2A [Canis lupus familiaris (dog)] - Gene

Summary

Gene symbol: LOC100683001
Gene description: small integral membrane protein 10-like protein 2A
Gene type: protein coding
RefSeq status: MODEL
Organism: Canis lupus familiaris (sub-species: familiaris)
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Also known as: FAM220A; C6H7orf70
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Genomic context

Location:: chromosome: 6

Exon count:: 4

Annotation release	Status	Assembly	Chr	Location
106	current	ROS_Cfam_1.0 (GCF_014441545.1)	6	NC_051810.1 (11693112..11712092, complement)
106	current	Dog10K_Boxer_Tasha (GCF_000002285.5)	6	NC_006588.4 (13317709..13336687, complement)
106	current	UU_Cfam_GSD_1.0 (GCF_011100685.1)	6	NC_049227.1 (11775631..11795213, complement)
106	current	UMICH_Zoey_3.1 (GCF_005444595.1)	6	NC_049266.1 (11569420..11588404, complement)
106	current	UNSW_CanFamBas_1.0 (GCF_013276365.1)	6	NC_049747.1 (11548525..11567497, complement)

Chromosome 6 - NC_051810.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Bibliography

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GeneRIFs: Gene References Into Functions

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General protein information

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Preferred Names: protein FAM220A; small integral membrane protein 10-like protein 2A; translation initiation factor IF-2; uncharacterized protein LOC100683001

Names: family with sequence similarity 220 member A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

NC_051810.1 Reference ROS_Cfam_1.0

Range

11693112..11712092 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038670445.1 → XP_038526373.1 translation initiation factor IF-2 isoform X1

Conserved Domains (1) summary

pfam15118
Location:119 → 182

DUF4560; Domain of unknown function (DUF4560)

Alternate UMICH_Zoey_3.1

Genomic

NC_049266.1 Alternate UMICH_Zoey_3.1

Range

11569420..11588404 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038477702.1 → XP_038333630.1 uncharacterized protein LOC100683001 isoform X1

Conserved Domains (1) summary

pfam15118
Location:119 → 182

DUF4560; Domain of unknown function (DUF4560)

Alternate UNSW_CanFamBas_1.0

Genomic

NC_049747.1 Alternate UNSW_CanFamBas_1.0

Range

11548525..11567497 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038605848.1 → XP_038461776.1 uncharacterized protein LOC100683001 isoform X1

Conserved Domains (1) summary

pfam15118
Location:119 → 182

DUF4560; Domain of unknown function (DUF4560)

Alternate UU_Cfam_GSD_1.0

Genomic

NC_049227.1 Alternate UU_Cfam_GSD_1.0

Range

11775631..11795213 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038541713.1 → XP_038397641.1 small integral membrane protein 10-like protein 2A isoform X2

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

NC_006588.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

Range

13317709..13336687 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038558373.1 → XP_038414301.1 uncharacterized protein LOC100683001 isoform X1

Conserved Domains (1) summary

pfam15118
Location:119 → 182

DUF4560; Domain of unknown function (DUF4560)