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    Vps16A vacuolar protein sorting 16 [ Drosophila yakuba ]

    Gene ID: 6536335, updated on 23-May-2024

    Summary

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    Gene symbol
    Vps16A
    Gene description
    vacuolar protein sorting 16
    Locus tag
    Dyak_GE25939
    See related
    EnsemblRapid:LOC6536335
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Drosophila yakuba
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    GE25939; GE25939-PA
    Orthologs
    fruit fly all
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    Genomic context

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    See Vps16A in Genome Data Viewer
    Location:
    chromosome: 3R
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    102 current Prin_Dyak_Tai18E2_2.1 (GCF_016746365.2) 3R NC_052530.2 (10910342..10913577)
    101 previous assembly Prin_Dyak_Tai18E2_2.0 (GCF_016746365.1) 3R NC_052530.1 (10910387..10913608)

    Chromosome 3R - NC_052530.2Genomic Context describing neighboring genes Neighboring gene tryptophan--tRNA ligase, cytoplasmic Neighboring gene salivary gland-expressed bHLH Neighboring gene uncharacterized LOC6536336 Neighboring gene Heterochromatin Protein 1e Neighboring gene chymotrypsin-2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables actin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in endosomal transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in intracellular protein transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in vacuole fusion, non-autophagic IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of HOPS complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in endosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in lysosomal membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    vacuolar protein sorting-associated protein 16 homolog
    Names
    Dyak\GE25939
    Dyak\GE25939-PA
    dyak_GLEANR_9526

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Drosophila yakuba Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Prin_Dyak_Tai18E2_2.1 Primary Assembly

    Genomic

    1. NC_052530.2 Reference Prin_Dyak_Tai18E2_2.1 Primary Assembly

      Range
      10910342..10913577
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002096883.4 → XP_002096919.1  vacuolar protein sorting-associated protein 16 homolog

      See identical proteins and their annotated locations for XP_002096919.1

      UniProtKB/TrEMBL
      B4PUL4
      Related
      XP_002096919.1, XM_002096883.4
      Conserved Domains (2) summary
      pfam04841
      Location:6 → 421
      Vps16_N; Vps16, N-terminal region
      pfam04840
      Location:515 → 828
      Vps16_C; Vps16, C-terminal region
    Nucleotide Protein Strain
    Heading Accession and Version

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