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    SFMBT2 Scm like with four mbt domains 2 [ Mauremys reevesii (Reeves's turtle) ]

    Gene ID: 120395300, updated on 21-Mar-2024

    Summary

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    Gene symbol
    SFMBT2
    Gene description
    Scm like with four mbt domains 2
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Mauremys reevesii
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Testudinoidea; Geoemydidae; Geoemydinae; Mauremys
    Orthologs
    human mouse all
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    Genomic context

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    See SFMBT2 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    24
    Annotation release Status Assembly LG Location
    100 current ASM1616193v1 (GCF_016161935.1) 1 NC_052623.1 (349056499..349248852)

    Linkage Group 1 - NC_052623.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120395304 Neighboring gene inter-alpha-trypsin inhibitor heavy chain 5 Neighboring gene store-operated calcium entry regulator STIMATE-like Neighboring gene uncharacterized LOC120397492 Neighboring gene uncharacterized LOC120379862 Neighboring gene uncharacterized LOC120379993

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_052623.1 Chromosome 1 Reference ASM1616193v1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Using genes as characters and a parsimony analysis to explore the phylogenetic position of turtles. Lu B, et al. PLoS One, 2013. PMID 24278129, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables histone binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transcription corepressor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    scm-like with four MBT domains protein 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Mauremys reevesii Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM1616193v1 Primary Assembly

    Genomic

    1. NC_052623.1 Reference ASM1616193v1 Primary Assembly

      Range
      349056499..349248852
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039519596.1 → XP_039375530.1  scm-like with four MBT domains protein 2 isoform X1

      Conserved Domains (3) summary
      cd09581
      Location:817 → 896
      SAM_Scm-like-4MBT1,2; SAM domain of Scm-like-4MBT1,2 proteins of Polycomb group
      smart00561
      Location:51 → 148
      MBT; Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2
      pfam12140
      Location:533 → 648
      SLED; SLED domain

    2. XM_039519600.1 → XP_039375534.1  scm-like with four MBT domains protein 2 isoform X2

      Conserved Domains (3) summary
      cd09581
      Location:816 → 895
      SAM_Scm-like-4MBT1,2; SAM domain of Scm-like-4MBT1,2 proteins of Polycomb group
      smart00561
      Location:51 → 148
      MBT; Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2
      pfam12140
      Location:532 → 647
      SLED; SLED domain

    3. XM_039519597.1 → XP_039375531.1  scm-like with four MBT domains protein 2 isoform X1

      Conserved Domains (3) summary
      cd09581
      Location:817 → 896
      SAM_Scm-like-4MBT1,2; SAM domain of Scm-like-4MBT1,2 proteins of Polycomb group
      smart00561
      Location:51 → 148
      MBT; Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2
      pfam12140
      Location:533 → 648
      SLED; SLED domain

    4. XM_039519599.1 → XP_039375533.1  scm-like with four MBT domains protein 2 isoform X1

      Conserved Domains (3) summary
      cd09581
      Location:817 → 896
      SAM_Scm-like-4MBT1,2; SAM domain of Scm-like-4MBT1,2 proteins of Polycomb group
      smart00561
      Location:51 → 148
      MBT; Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2
      pfam12140
      Location:533 → 648
      SLED; SLED domain

    5. XM_039519598.1 → XP_039375532.1  scm-like with four MBT domains protein 2 isoform X1

      Conserved Domains (3) summary
      cd09581
      Location:817 → 896
      SAM_Scm-like-4MBT1,2; SAM domain of Scm-like-4MBT1,2 proteins of Polycomb group
      smart00561
      Location:51 → 148
      MBT; Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2
      pfam12140
      Location:533 → 648
      SLED; SLED domain
    Nucleotide Protein
    Heading Accession and Version

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