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    CG15262 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 34901, updated on 9-Dec-2024

    Summary

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    Official Symbol
    CG15262provided by FlyBase
    Official Full Name
    uncharacterized proteinprovided by FlyBase
    Primary source
    FLYBASE:FBgn0028852
    Locus tag
    Dmel_CG15262
    See related
    AllianceGenome:FB:FBgn0028852
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    BG:DS07851.5; Dmel\CG15262
    Summary
    Predicted to be involved in nuclear-transcribed mRNA poly(A) tail shortening and regulation of stem cell population maintenance. Predicted to be part of CCR4-NOT core complex. Predicted to be active in P-body. Orthologous to human CNOT2 (CCR4-NOT transcription complex subunit 2). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See CG15262 in Genome Data Viewer
    Location:
    35D1-35D1; 2-51 cM
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 2L NT_033779.5 (15297808..15299367)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 2L NT_033779.4 (15297808..15299367)

    Chromosome 2L - NT_033779.5Genomic Context describing neighboring genes Neighboring gene male sterile (2) 35Ci Neighboring gene long non-coding RNA:CR43764 Neighboring gene no hitter Neighboring gene escargot

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A Drosophila behavioral mutant, down and out (dao), is defective in an essential regulator of Erg potassium channels. Fergestad T, et al. Proc Natl Acad Sci U S A, 2010 Mar 23. PMID 20212103, Free PMC Article
    2. Argonaute2 and LaminB modulate gene expression by controlling chromatin topology. Nazer E, et al. PLoS Genet, 2018 Mar. PMID 29529026, Free PMC Article
    3. Genome-wide in vitro and in vivo RNAi screens reveal Fer3 to be an important regulator of kkv transcription in Drosophila. Yue X, et al. Insect Sci, 2022 Jun. PMID 34351065
    4. An exploration of the sequence of a 2.9-Mb region of the genome of Drosophila melanogaster: the Adh region. Ashburner M, et al. Genetics, 1999 Sep. PMID 10471707, Free PMC Article
    5. Next-generation large-scale binary protein interaction network for Drosophila melanogaster. Tang HW, et al. Nat Commun, 2023 Apr 15. PMID 37061542, Free PMC Article

    See all (26) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by FlyBase

    Process Evidence Code Pubs
    involved_in nuclear-transcribed mRNA poly(A) tail shortening IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in regulation of stem cell population maintenance IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    part_of CCR4-NOT core complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    part_of CCR4-NOT core complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    is_active_in P-body IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein
    Names
    CG15262-PA

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033779.5 Reference assembly

      Range
      15297808..15299367
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_135906.3 → NP_609750.1  uncharacterized protein Dmel_CG15262 [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_609750.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A8WHE5, Q9V3I9
      Related
      FBpp0080292
      Conserved Domains (1) summary
      pfam04153
      Location:294 → 414
      NOT2_3_5; NOT2 / NOT3 / NOT5 family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9V3I9 Q9V3I9

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