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    fam20b FAM20B glycosaminoglycan xylosylkinase [ Polypterus senegalus (gray bichir) ]

    Gene ID: 120514272, updated on 8-May-2024

    Summary

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    Gene symbol
    fam20b
    Gene description
    FAM20B glycosaminoglycan xylosylkinase
    Locus tag
    GTO96_0009064
    See related
    EnsemblRapid:ENSSTSG00000016341
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Polypterus senegalus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Polypteriformes; Polypteridae; Polypterus
    Orthologs
    human zebrafish all
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    Genomic context

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    See fam20b in Genome Data Viewer
    Location:
    chromosome: 14
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    100 current ASM1683550v1 (GCF_016835505.1) 14 NC_053167.1 (145486186..145490270)

    Chromosome 14 - NC_053167.1Genomic Context describing neighboring genes Neighboring gene cytochrome c oxidase assembly factor 7 Neighboring gene Ral GEF with PH domain and SH3 binding motif 2 Neighboring gene angiopoietin-like 1a Neighboring gene transcriptional adaptor 1 Neighboring gene Fas ligand (TNF superfamily, member 6)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_053167.1 Chromosome 14 Reference ASM1683550v1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables phosphotransferase activity, alcohol group as acceptor IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi apparatus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    glycosaminoglycan xylosylkinase
    Names
    XYLK xylosylkinase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Polypterus senegalus Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM1683550v1 Primary Assembly

    Genomic

    1. NC_053167.1 Reference ASM1683550v1 Primary Assembly

      Range
      145486186..145490270
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039734568.1 → XP_039590502.1  glycosaminoglycan xylosylkinase

      UniProtKB/TrEMBL
      A0A8X7X3T9
      Conserved Domains (1) summary
      cd10470
      Location:188 → 394
      FAM20B_C; C-terminal putative kinase domain of FAM20B xylose kinase

    2. XM_039734567.1 → XP_039590501.1  glycosaminoglycan xylosylkinase

      UniProtKB/TrEMBL
      A0A8X7X3T9
      Conserved Domains (1) summary
      cd10470
      Location:188 → 394
      FAM20B_C; C-terminal putative kinase domain of FAM20B xylose kinase

    3. XM_039734566.1 → XP_039590500.1  glycosaminoglycan xylosylkinase

      UniProtKB/TrEMBL
      A0A8X7X3T9
      Related
      ENSSTSP00000036841.1, ENSSTST00000041381.1
      Conserved Domains (1) summary
      cd10470
      Location:188 → 394
      FAM20B_C; C-terminal putative kinase domain of FAM20B xylose kinase
    Nucleotide Protein
    Heading Accession and Version

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