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    LOC107962139 3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplastic [ Gossypium hirsutum (cotton) ]

    Gene ID: 107962139, updated on 12-Aug-2024

    Summary

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    Gene symbol
    LOC107962139
    Gene description
    3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplastic
    Locus tag
    ERO13_D09G078200v2
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gossypium hirsutum
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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    Genomic context

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    See LOC107962139 in Genome Data Viewer
    Location:
    chromosome: D09
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_08 current Gossypium_hirsutum_v2.1 (GCF_007990345.1) D09 NC_053445.1 (35005687..35009949, complement)

    Chromosome D09 - NC_053445.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein At2g34460, chloroplastic Neighboring gene transfer RNA arginine (anticodon ACG) Neighboring gene UDP-N-acetylglucosamine transferase subunit ALG14 homolog Neighboring gene purine permease 21 Neighboring gene uncharacterized LOC107892930

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_053445.1 Chromosome D09 Reference Gossypium_hirsutum_v2.1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables 3-oxoacyl-[acyl-carrier-protein] synthase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in fatty acid biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplastic

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_007990345.1-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Gossypium_hirsutum_v2.1 Primary Assembly

    Genomic

    1. NC_053445.1 Reference Gossypium_hirsutum_v2.1 Primary Assembly

      Range
      35005687..35009949 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_016898383.2 → XP_016753872.1  3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplastic

      UniProtKB/TrEMBL
      A0A1U8PRS3
      Conserved Domains (1) summary
      cd00834
      Location:61 → 468
      KAS_I_II; Beta-ketoacyl-acyl carrier protein (ACP) synthase (KAS), type I and II. KASs are responsible for the elongation steps in fatty acid biosynthesis. KASIII catalyses the initial condensation and KAS I and II catalyze further elongation steps by Claisen ...
    Nucleotide Protein
    Heading Accession and Version

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