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    LOC120561001 whirlin-like [ Perca fluviatilis (European perch) ]

    Gene ID: 120561001, updated on 10-Jul-2024

    Summary

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    Gene symbol
    LOC120561001
    Gene description
    whirlin-like
    Locus tag
    PFLUV_G00067740
    See related
    EnsemblRapid:ENSPFLG00020003131
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Perca fluviatilis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Percoidei; Percidae; Percinae; Perca
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    Genomic context

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    See LOC120561001 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    100 current GENO_Pfluv_1.0 (GCF_010015445.1) 6 NC_053117.1 (11901650..12061646, complement)

    Chromosome 6 - NC_053117.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120560076 Neighboring gene uncharacterized LOC120560077 Neighboring gene NADPH oxidase activator 1 Neighboring gene dipeptidyl-peptidase 7 Neighboring gene mannosidase, alpha, class 1B, member 1b

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_053117.1 Chromosome 6 Reference GENO_Pfluv_1.0

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in auditory receptor cell stereocilium organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in sensory perception of sound IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cilium IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in photoreceptor inner segment IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of stereocilia ankle link complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in stereocilium tip IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    whirlin-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Perca fluviatilis Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GENO_Pfluv_1.0

    Genomic

    1. NC_053117.1 Reference GENO_Pfluv_1.0

      Range
      11901650..12061646 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039803942.1 → XP_039659876.1  whirlin-like isoform X2

      Related
      ENSPFLP00020006575.1, ENSPFLT00020007489.1
      Conserved Domains (4) summary
      PHA03325
      Location:790 → 895
      PHA03325; nuclear-egress-membrane-like protein; Provisional
      cd00992
      Location:291 → 371
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
      cd07356
      Location:21 → 98
      HN_L-whirlin_R1_like; first harmonin_N_like domain (repeat 1) of the long isoform of whirlin, and related domains
      cl11968
      Location:453 → 524
      harmonin_N_like; N-terminal protein-binding module of harmonin and similar domains, also known as HHD (harmonin homology domain)

    2. XM_039803941.1 → XP_039659875.1  whirlin-like isoform X1

      Conserved Domains (3) summary
      cd00992
      Location:291 → 371
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
      cd07356
      Location:21 → 98
      HN_L-whirlin_R1_like; first harmonin_N_like domain (repeat 1) of the long isoform of whirlin, and related domains
      cl11968
      Location:453 → 524
      harmonin_N_like; N-terminal protein-binding module of harmonin and similar domains, also known as HHD (harmonin homology domain)
    Nucleotide Protein
    Heading Accession and Version

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