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    RRP8 ribosomal RNA processing 8 [ Bufo bufo (common toad) ]

    Gene ID: 120996654, updated on 21-Mar-2024

    Summary

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    Gene symbol
    RRP8
    Gene description
    ribosomal RNA processing 8
    See related
    EnsemblRapid:ENSBBFG00005005701
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Bufo bufo
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Neobatrachia; Hyloidea; Bufonidae; Bufo
    Orthologs
    human mouse all
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    Genomic context

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    See RRP8 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    100 current aBufBuf1.1 (GCF_905171765.1) 3 NC_053391.1 (705571804..705600278, complement)

    Chromosome 3 - NC_053391.1Genomic Context describing neighboring genes Neighboring gene KH domain-containing protein 3-like Neighboring gene dynein heavy chain domain 1 Neighboring gene uncharacterized LOC120996655 Neighboring gene uncharacterized LOC120994246 Neighboring gene integrin linked kinase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_053391.1 Chromosome 3 Reference aBufBuf1.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables methylated histone binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cellular response to glucose starvation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in rDNA heterochromatin formation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by glucose IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of chromatin silencing complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleolus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of rDNA heterochromatin IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ribosomal RNA-processing protein 8

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Bufo bufo Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference aBufBuf1.1

    Genomic

    1. NC_053391.1 Reference aBufBuf1.1

      Range
      705571804..705600278 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040426761.1 → XP_040282695.1  ribosomal RNA-processing protein 8

      Related
      ENSBBFP00005008382.1, ENSBBFT00005008853.1
      Conserved Domains (3) summary
      PTZ00121
      Location:19 → 286
      PTZ00121; MAEBL; Provisional
      TIGR02072
      Location:335 → 428
      BioC; malonyl-acyl carrier protein O-methyltransferase BioC
      cl17173
      Location:408 → 462
      AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...
    Nucleotide Protein
    Heading Accession and Version

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