U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Protein

    • Showing Current items.

    LCMT2 leucine carboxyl methyltransferase 2 [ Bufo bufo (common toad) ]

    Gene ID: 120996664, updated on 21-Mar-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    LCMT2
    Gene description
    leucine carboxyl methyltransferase 2
    See related
    EnsemblRapid:ENSBBFG00005006847
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Bufo bufo
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Neobatrachia; Hyloidea; Bufonidae; Bufo
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LCMT2 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    100 current aBufBuf1.1 (GCF_905171765.1) 3 NC_053391.1 (706717563..706822054, complement)

    Chromosome 3 - NC_053391.1Genomic Context describing neighboring genes Neighboring gene putative uncharacterized protein ENSP00000383309 Neighboring gene tyrosinase-like Neighboring gene neurofilament heavy polypeptide-like Neighboring gene fibrous sheath CABYR-binding protein-like

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_053391.1 Chromosome 3 Reference aBufBuf1.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables tRNA methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in tRNA methylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in wybutosine biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    tRNA wybutosine-synthesizing protein 4

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Bufo bufo Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference aBufBuf1.1

    Genomic

    1. NC_053391.1 Reference aBufBuf1.1

      Range
      706717563..706822054 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040426774.1 → XP_040282708.1  tRNA wybutosine-synthesizing protein 4

      Conserved Domains (1) summary
      cl17173
      Location:20 → 191
      AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...

    2. XM_040426772.1 → XP_040282706.1  tRNA wybutosine-synthesizing protein 4

      Related
      ENSBBFP00005010020.1, ENSBBFT00005010614.1
      Conserved Domains (1) summary
      cl17173
      Location:20 → 191
      AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...

    3. XM_040426775.1 → XP_040282709.1  tRNA wybutosine-synthesizing protein 4

      Conserved Domains (1) summary
      cl17173
      Location:20 → 191
      AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...

    4. XM_040426776.1 → XP_040282710.1  tRNA wybutosine-synthesizing protein 4

      Conserved Domains (1) summary
      cl17173
      Location:20 → 191
      AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...

    5. XM_040426773.1 → XP_040282707.1  tRNA wybutosine-synthesizing protein 4

      Related
      ENSBBFP00005010014.1, ENSBBFT00005010608.1
      Conserved Domains (1) summary
      cl17173
      Location:20 → 191
      AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.