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    OTOF otoferlin [ Falco naumanni (lesser kestrel) ]

    Gene ID: 121090506, updated on 3-Aug-2024

    Summary

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    Gene symbol
    OTOF
    Gene description
    otoferlin
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Falco naumanni
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Falconiformes; Falconidae; Falco
    Orthologs
    human mouse all
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    Genomic context

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    See OTOF in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    53
    Annotation release Status Assembly Chr Location
    100 current bFalNau1.pat (GCF_017639655.1) 6 NC_054059.1 (73173917..73289713)

    Chromosome 6 - NC_054059.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 35 member F6 Neighboring gene potassium two pore domain channel subfamily K member 3 Neighboring gene selenoprotein I Neighboring gene interferon-induced very large GTPase 1-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_054059.1 Chromosome 6 Reference bFalNau1.pat Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables AP-2 adaptor complex binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in plasma membrane organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in synaptic vesicle priming IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in presynaptic active zone membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in synaptic vesicle membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    otoferlin

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Falco naumanni Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bFalNau1.pat Primary Assembly

    Genomic

    1. NC_054059.1 Reference bFalNau1.pat Primary Assembly

      Range
      73173917..73289713
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040599107.1 → XP_040455041.1  otoferlin isoform X1

      Conserved Domains (6) summary
      cd04011
      Location:466 → 577
      C2B_Ferlin; C2 domain second repeat in Ferlin
      cd04017
      Location:1176 → 1313
      C2D_Ferlin; C2 domain fourth repeat in Ferlin
      cd04018
      Location:633 → 782
      C2C_Ferlin; C2 domain third repeat in Ferlin
      cd04037
      Location:1718 → 1841
      C2E_Ferlin; C2 domain fifth repeat in Ferlin
      cd08373
      Location:123 → 250
      C2A_Ferlin; C2 domain first repeat in Ferlin
      cd08374
      Location:1958 → 2091
      C2F_Ferlin; C2 domain sixth repeat in Ferlin

    2. XM_040599109.1 → XP_040455043.1  otoferlin isoform X3

      Conserved Domains (6) summary
      cd04011
      Location:466 → 577
      C2B_Ferlin; C2 domain second repeat in Ferlin
      cd04017
      Location:1176 → 1313
      C2D_Ferlin; C2 domain fourth repeat in Ferlin
      cd04018
      Location:633 → 782
      C2C_Ferlin; C2 domain third repeat in Ferlin
      cd04037
      Location:1708 → 1831
      C2E_Ferlin; C2 domain fifth repeat in Ferlin
      cd08373
      Location:123 → 250
      C2A_Ferlin; C2 domain first repeat in Ferlin
      cd08374
      Location:1948 → 2081
      C2F_Ferlin; C2 domain sixth repeat in Ferlin

    3. XM_040599108.1 → XP_040455042.1  otoferlin isoform X2

      Conserved Domains (6) summary
      cd04011
      Location:466 → 577
      C2B_Ferlin; C2 domain second repeat in Ferlin
      cd04017
      Location:1176 → 1313
      C2D_Ferlin; C2 domain fourth repeat in Ferlin
      cd04018
      Location:633 → 782
      C2C_Ferlin; C2 domain third repeat in Ferlin
      cd04037
      Location:1717 → 1840
      C2E_Ferlin; C2 domain fifth repeat in Ferlin
      cd08373
      Location:123 → 250
      C2A_Ferlin; C2 domain first repeat in Ferlin
      cd08374
      Location:1957 → 2090
      C2F_Ferlin; C2 domain sixth repeat in Ferlin

    4. XM_040599110.1 → XP_040455044.1  otoferlin isoform X4

      Conserved Domains (6) summary
      cd04011
      Location:466 → 577
      C2B_Ferlin; C2 domain second repeat in Ferlin
      cd04017
      Location:1176 → 1313
      C2D_Ferlin; C2 domain fourth repeat in Ferlin
      cd04018
      Location:633 → 782
      C2C_Ferlin; C2 domain third repeat in Ferlin
      cd04037
      Location:1707 → 1830
      C2E_Ferlin; C2 domain fifth repeat in Ferlin
      cd08373
      Location:123 → 250
      C2A_Ferlin; C2 domain first repeat in Ferlin
      cd08374
      Location:1947 → 2080
      C2F_Ferlin; C2 domain sixth repeat in Ferlin

    5. XM_040599111.1 → XP_040455045.1  otoferlin isoform X5

      Conserved Domains (6) summary
      cd04011
      Location:466 → 577
      C2B_Ferlin; C2 domain second repeat in Ferlin
      cd04017
      Location:1176 → 1313
      C2D_Ferlin; C2 domain fourth repeat in Ferlin
      cd04018
      Location:633 → 782
      C2C_Ferlin; C2 domain third repeat in Ferlin
      cd04037
      Location:1707 → 1830
      C2E_Ferlin; C2 domain fifth repeat in Ferlin
      cd08373
      Location:123 → 250
      C2A_Ferlin; C2 domain first repeat in Ferlin
      cd08374
      Location:1947 → 2080
      C2F_Ferlin; C2 domain sixth repeat in Ferlin

    6. XM_040599112.1 → XP_040455046.1  otoferlin isoform X6

      Conserved Domains (6) summary
      cd04011
      Location:466 → 577
      C2B_Ferlin; C2 domain second repeat in Ferlin
      cd04017
      Location:1176 → 1313
      C2D_Ferlin; C2 domain fourth repeat in Ferlin
      cd04018
      Location:633 → 782
      C2C_Ferlin; C2 domain third repeat in Ferlin
      cd04037
      Location:1698 → 1821
      C2E_Ferlin; C2 domain fifth repeat in Ferlin
      cd08373
      Location:123 → 250
      C2A_Ferlin; C2 domain first repeat in Ferlin
      cd08374
      Location:1938 → 2071
      C2F_Ferlin; C2 domain sixth repeat in Ferlin

    7. XM_040599113.1 → XP_040455047.1  otoferlin isoform X7

      Conserved Domains (6) summary
      cd04011
      Location:466 → 577
      C2B_Ferlin; C2 domain second repeat in Ferlin
      cd04017
      Location:1176 → 1313
      C2D_Ferlin; C2 domain fourth repeat in Ferlin
      cd04018
      Location:633 → 782
      C2C_Ferlin; C2 domain third repeat in Ferlin
      cd04037
      Location:1697 → 1820
      C2E_Ferlin; C2 domain fifth repeat in Ferlin
      cd08373
      Location:123 → 250
      C2A_Ferlin; C2 domain first repeat in Ferlin
      cd08374
      Location:1937 → 2070
      C2F_Ferlin; C2 domain sixth repeat in Ferlin

    8. XM_040599114.1 → XP_040455048.1  otoferlin isoform X8

      Conserved Domains (6) summary
      cd04011
      Location:466 → 577
      C2B_Ferlin; C2 domain second repeat in Ferlin
      cd04017
      Location:1176 → 1313
      C2D_Ferlin; C2 domain fourth repeat in Ferlin
      cd04018
      Location:633 → 782
      C2C_Ferlin; C2 domain third repeat in Ferlin
      cd04037
      Location:1687 → 1810
      C2E_Ferlin; C2 domain fifth repeat in Ferlin
      cd08373
      Location:123 → 250
      C2A_Ferlin; C2 domain first repeat in Ferlin
      cd08374
      Location:1927 → 2060
      C2F_Ferlin; C2 domain sixth repeat in Ferlin

    9. XM_040599115.1 → XP_040455049.1  otoferlin isoform X9

      Conserved Domains (6) summary
      cd04011
      Location:466 → 577
      C2B_Ferlin; C2 domain second repeat in Ferlin
      cd04017
      Location:1176 → 1313
      C2D_Ferlin; C2 domain fourth repeat in Ferlin
      cd04018
      Location:633 → 782
      C2C_Ferlin; C2 domain third repeat in Ferlin
      cd04037
      Location:1687 → 1810
      C2E_Ferlin; C2 domain fifth repeat in Ferlin
      cd08373
      Location:123 → 250
      C2A_Ferlin; C2 domain first repeat in Ferlin
      cd08374
      Location:1927 → 2060
      C2F_Ferlin; C2 domain sixth repeat in Ferlin

    10. XM_040599116.1 → XP_040455050.1  otoferlin isoform X10

      Conserved Domains (6) summary
      cd04011
      Location:381 → 492
      C2B_Ferlin; C2 domain second repeat in Ferlin
      cd04017
      Location:1091 → 1228
      C2D_Ferlin; C2 domain fourth repeat in Ferlin
      cd04018
      Location:548 → 697
      C2C_Ferlin; C2 domain third repeat in Ferlin
      cd04037
      Location:1633 → 1756
      C2E_Ferlin; C2 domain fifth repeat in Ferlin
      cd08373
      Location:123 → 250
      C2A_Ferlin; C2 domain first repeat in Ferlin
      cd08374
      Location:1873 → 2006
      C2F_Ferlin; C2 domain sixth repeat in Ferlin

    11. XM_040599117.1 → XP_040455051.1  otoferlin isoform X11

      Conserved Domains (6) summary
      cd04011
      Location:381 → 492
      C2B_Ferlin; C2 domain second repeat in Ferlin
      cd04017
      Location:1091 → 1228
      C2D_Ferlin; C2 domain fourth repeat in Ferlin
      cd04018
      Location:548 → 697
      C2C_Ferlin; C2 domain third repeat in Ferlin
      cd04037
      Location:1622 → 1745
      C2E_Ferlin; C2 domain fifth repeat in Ferlin
      cd08373
      Location:123 → 250
      C2A_Ferlin; C2 domain first repeat in Ferlin
      cd08374
      Location:1862 → 1995
      C2F_Ferlin; C2 domain sixth repeat in Ferlin

    12. XM_040599118.1 → XP_040455052.1  otoferlin isoform X12

      Conserved Domains (6) summary
      cd04011
      Location:381 → 492
      C2B_Ferlin; C2 domain second repeat in Ferlin
      cd04017
      Location:1091 → 1228
      C2D_Ferlin; C2 domain fourth repeat in Ferlin
      cd04018
      Location:548 → 697
      C2C_Ferlin; C2 domain third repeat in Ferlin
      cd04037
      Location:1612 → 1735
      C2E_Ferlin; C2 domain fifth repeat in Ferlin
      cd08373
      Location:123 → 250
      C2A_Ferlin; C2 domain first repeat in Ferlin
      cd08374
      Location:1852 → 1985
      C2F_Ferlin; C2 domain sixth repeat in Ferlin

    13. XM_040599119.1 → XP_040455053.1  otoferlin isoform X13

      Conserved Domains (6) summary
      cd04011
      Location:381 → 492
      C2B_Ferlin; C2 domain second repeat in Ferlin
      cd04017
      Location:1091 → 1228
      C2D_Ferlin; C2 domain fourth repeat in Ferlin
      cd04018
      Location:548 → 697
      C2C_Ferlin; C2 domain third repeat in Ferlin
      cd04037
      Location:1602 → 1725
      C2E_Ferlin; C2 domain fifth repeat in Ferlin
      cd08373
      Location:123 → 250
      C2A_Ferlin; C2 domain first repeat in Ferlin
      cd08374
      Location:1842 → 1975
      C2F_Ferlin; C2 domain sixth repeat in Ferlin

    14. XM_040599120.1 → XP_040455054.1  otoferlin isoform X14

      Conserved Domains (5) summary
      cd04011
      Location:73 → 184
      C2B_Ferlin; C2 domain second repeat in Ferlin
      cd04017
      Location:783 → 920
      C2D_Ferlin; C2 domain fourth repeat in Ferlin
      cd04018
      Location:240 → 389
      C2C_Ferlin; C2 domain third repeat in Ferlin
      cd04037
      Location:1325 → 1448
      C2E_Ferlin; C2 domain fifth repeat in Ferlin
      cd08374
      Location:1565 → 1698
      C2F_Ferlin; C2 domain sixth repeat in Ferlin
    Nucleotide Protein
    Heading Accession and Version

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