U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Protein

    • Showing Current items.

    GARNL3 GTPase activating Rap/RanGAP domain like 3 [ Gallus gallus (chicken) ]

    Gene ID: 417087, updated on 3-Dec-2024

    Summary

    Go to the top of the page Help
    Symbol
    GARNL3provided by CGNC
    Full Name
    GTPase activating Rap/RanGAP domain like 3provided by CGNC
    Primary source
    CGNC:553
    See related
    Ensembl:ENSGALG00010028739
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See GARNL3 in Genome Data Viewer
    Location:
    chromosome: 17
    Exon count:
    36
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 17 NC_052548.1 (11008353..11064498)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 17 NC_052589.1 (10425234..10458736)

    Chromosome 17 - NC_052548.1Genomic Context describing neighboring genes Neighboring gene F-box and WD repeat domain containing 2 Neighboring gene solute carrier family 2 member 8

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables GTPase activator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in activation of GTPase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of small GTPase mediated signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    GTPase-activating Rap/Ran-GAP domain-like protein 3
    Names
    GTPase activating RANGAP domain-like 3

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001030676.3 → NP_001025847.2  GTPase-activating Rap/Ran-GAP domain-like protein 3

      Status: PROVISIONAL

      Source sequence(s)
      JAENSK010000308
      UniProtKB/Swiss-Prot
      Q5ZJY3
      Related
      ENSGALP00010042807.1, ENSGALT00010069546.1
      Conserved Domains (1) summary
      cl02434
      Location:481 → 774
      CNH; CNH domain

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052548.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      11008353..11064498
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040648984.2 → XP_040504918.1  GTPase-activating Rap/Ran-GAP domain-like protein 3 isoform X1

      UniProtKB/TrEMBL
      A0A3Q2U522
      Conserved Domains (2) summary
      pfam00780
      Location:495 → 797
      CNH; CNH domain
      pfam02145
      Location:223 → 401
      Rap_GAP; Rap/ran-GAP

    2. XM_040648985.2 → XP_040504919.1  GTPase-activating Rap/Ran-GAP domain-like protein 3 isoform X1

      UniProtKB/TrEMBL
      A0A3Q2U522
      Conserved Domains (2) summary
      pfam00780
      Location:495 → 797
      CNH; CNH domain
      pfam02145
      Location:223 → 401
      Rap_GAP; Rap/ran-GAP

    3. XM_040648989.2 → XP_040504923.1  GTPase-activating Rap/Ran-GAP domain-like protein 3 isoform X1

      UniProtKB/TrEMBL
      A0A3Q2U522
      Conserved Domains (2) summary
      pfam00780
      Location:495 → 797
      CNH; CNH domain
      pfam02145
      Location:223 → 401
      Rap_GAP; Rap/ran-GAP

    4. XM_040648995.2 → XP_040504929.1  GTPase-activating Rap/Ran-GAP domain-like protein 3 isoform X7

      UniProtKB/TrEMBL
      A0A3Q2U522
      Conserved Domains (1) summary
      cl02434
      Location:489 → 782
      CNH; CNH domain

    5. XM_040649021.2 → XP_040504955.1  GTPase-activating Rap/Ran-GAP domain-like protein 3 isoform X37

      UniProtKB/TrEMBL
      A0A3Q2U522
      Conserved Domains (1) summary
      cl02434
      Location:489 → 782
      CNH; CNH domain

    6. XM_040649023.2 → XP_040504957.1  GTPase-activating Rap/Ran-GAP domain-like protein 3 isoform X39

      UniProtKB/TrEMBL
      A0A3Q2U522
      Conserved Domains (1) summary
      cl02434
      Location:489 → 782
      CNH; CNH domain

    7. XM_040648991.2 → XP_040504925.1  GTPase-activating Rap/Ran-GAP domain-like protein 3 isoform X3

      UniProtKB/TrEMBL
      A0A3Q2U522
      Conserved Domains (1) summary
      cl02434
      Location:489 → 782
      CNH; CNH domain

    8. XM_040648997.2 → XP_040504931.1  GTPase-activating Rap/Ran-GAP domain-like protein 3 isoform X10

      UniProtKB/TrEMBL
      A0A3Q2U522
      Conserved Domains (1) summary
      cl02434
      Location:489 → 782
      CNH; CNH domain

    9. XM_040649022.2 → XP_040504956.1  GTPase-activating Rap/Ran-GAP domain-like protein 3 isoform X38

      UniProtKB/TrEMBL
      A0A3Q2U522
      Conserved Domains (1) summary
      cl02434
      Location:489 → 782
      CNH; CNH domain

    10. XM_040649024.2 → XP_040504958.1  GTPase-activating Rap/Ran-GAP domain-like protein 3 isoform X40

      UniProtKB/TrEMBL
      A0A3Q2U522
      Conserved Domains (1) summary
      cl02434
      Location:489 → 782
      CNH; CNH domain

    11. XM_040649004.2 → XP_040504938.1  GTPase-activating Rap/Ran-GAP domain-like protein 3 isoform X17

      UniProtKB/TrEMBL
      A0A3Q2U522
      Conserved Domains (1) summary
      cl02434
      Location:472 → 765
      CNH; CNH domain

    12. XM_040649014.2 → XP_040504948.1  GTPase-activating Rap/Ran-GAP domain-like protein 3 isoform X27

      UniProtKB/TrEMBL
      A0A8V1AA11
      Conserved Domains (1) summary
      cl02434
      Location:456 → 749
      CNH; CNH domain

    13. XM_040648990.2 → XP_040504924.1  GTPase-activating Rap/Ran-GAP domain-like protein 3 isoform X2

      UniProtKB/TrEMBL
      A0A3Q2U522
      Conserved Domains (1) summary
      cl02434
      Location:487 → 780
      CNH; CNH domain

    14. XM_040648996.2 → XP_040504930.1  GTPase-activating Rap/Ran-GAP domain-like protein 3 isoform X9

      UniProtKB/TrEMBL
      A0A3Q2U522
      Conserved Domains (1) summary
      cl02434
      Location:487 → 780
      CNH; CNH domain

    15. XM_040648992.2 → XP_040504926.1  GTPase-activating Rap/Ran-GAP domain-like protein 3 isoform X4

      UniProtKB/TrEMBL
      A0A3Q2U522
      Conserved Domains (1) summary
      cl02434
      Location:487 → 780
      CNH; CNH domain

    16. XM_040648999.2 → XP_040504933.1  GTPase-activating Rap/Ran-GAP domain-like protein 3 isoform X12

      UniProtKB/TrEMBL
      A0A3Q2U522, A0A8V1AA16
      Related
      ENSGALP00010042812.1, ENSGALT00010069551.1
      Conserved Domains (1) summary
      cl02434
      Location:487 → 780
      CNH; CNH domain

    17. XM_046901680.1 → XP_046757636.1  GTPase-activating Rap/Ran-GAP domain-like protein 3 isoform X19

      UniProtKB/TrEMBL
      A0A3Q2U522

    18. XM_040649016.2 → XP_040504950.1  GTPase-activating Rap/Ran-GAP domain-like protein 3 isoform X29

      UniProtKB/TrEMBL
      A0A8V1AA11
      Conserved Domains (1) summary
      cl02434
      Location:454 → 747
      CNH; CNH domain

    19. XM_040648998.2 → XP_040504932.1  GTPase-activating Rap/Ran-GAP domain-like protein 3 isoform X11

      UniProtKB/TrEMBL
      A0A3Q2U522
      Conserved Domains (1) summary
      cl02434
      Location:478 → 771
      CNH; CNH domain

    20. XM_040648993.2 → XP_040504927.1  GTPase-activating Rap/Ran-GAP domain-like protein 3 isoform X5

      UniProtKB/TrEMBL
      A0A3Q2U522
      Conserved Domains (2) summary
      pfam00780
      Location:489 → 791
      CNH; CNH domain
      pfam02145
      Location:217 → 395
      Rap_GAP; Rap/ran-GAP

    21. XM_040649000.2 → XP_040504934.1  GTPase-activating Rap/Ran-GAP domain-like protein 3 isoform X13

      UniProtKB/TrEMBL
      A0A3Q2U522
      Conserved Domains (1) summary
      cl02434
      Location:483 → 776
      CNH; CNH domain

    22. XM_040649002.2 → XP_040504936.1  GTPase-activating Rap/Ran-GAP domain-like protein 3 isoform X15

      UniProtKB/TrEMBL
      A0A3Q2U522
      Conserved Domains (1) summary
      cl02434
      Location:483 → 776
      CNH; CNH domain

    23. XM_040649025.2 → XP_040504959.1  GTPase-activating Rap/Ran-GAP domain-like protein 3 isoform X41

      UniProtKB/TrEMBL
      A0A3Q2U522
      Conserved Domains (1) summary
      cl02434
      Location:483 → 776
      CNH; CNH domain

    24. XM_046901681.1 → XP_046757637.1  GTPase-activating Rap/Ran-GAP domain-like protein 3 isoform X20

      UniProtKB/TrEMBL
      A0A3Q2U522

    25. XM_046901682.1 → XP_046757638.1  GTPase-activating Rap/Ran-GAP domain-like protein 3 isoform X26

      UniProtKB/TrEMBL
      A0A3Q2U522

    26. XM_040648994.2 → XP_040504928.1  GTPase-activating Rap/Ran-GAP domain-like protein 3 isoform X6

      UniProtKB/TrEMBL
      A0A3Q2U522
      Conserved Domains (2) summary
      pfam00780
      Location:487 → 789
      CNH; CNH domain
      pfam02145
      Location:215 → 393
      Rap_GAP; Rap/ran-GAP

    27. XM_040649001.2 → XP_040504935.1  GTPase-activating Rap/Ran-GAP domain-like protein 3 isoform X14

      UniProtKB/TrEMBL
      A0A3Q2U3C8, A0A3Q2U522
      Related
      ENSGALP00010042811.1, ENSGALT00010069550.1
      Conserved Domains (1) summary
      cl02434
      Location:481 → 774
      CNH; CNH domain

    28. XM_046901678.1 → XP_046757634.1  GTPase-activating Rap/Ran-GAP domain-like protein 3 isoform X8

      UniProtKB/TrEMBL
      A0A3Q2U522

    29. XM_040649005.2 → XP_040504939.1  GTPase-activating Rap/Ran-GAP domain-like protein 3 isoform X18

      UniProtKB/TrEMBL
      A0A3Q2U522
      Conserved Domains (1) summary
      cl02434
      Location:481 → 774
      CNH; CNH domain

    30. XM_040649026.2 → XP_040504960.1  GTPase-activating Rap/Ran-GAP domain-like protein 3 isoform X42

      UniProtKB/TrEMBL
      A0A3Q2U522
      Conserved Domains (1) summary
      cl02434
      Location:481 → 774
      CNH; CNH domain

    31. XM_040649009.2 → XP_040504943.1  GTPase-activating Rap/Ran-GAP domain-like protein 3 isoform X22

      UniProtKB/TrEMBL
      A0A3Q2U522
      Conserved Domains (1) summary
      cl02434
      Location:464 → 757
      CNH; CNH domain

    32. XM_040649013.2 → XP_040504947.1  GTPase-activating Rap/Ran-GAP domain-like protein 3 isoform X25

      UniProtKB/TrEMBL
      A0A3Q2U522
      Conserved Domains (1) summary
      cl02434
      Location:464 → 757
      CNH; CNH domain

    33. XM_040649011.2 → XP_040504945.1  GTPase-activating Rap/Ran-GAP domain-like protein 3 isoform X24

      UniProtKB/TrEMBL
      A0A3Q2U522
      Conserved Domains (1) summary
      cl02434
      Location:464 → 757
      CNH; CNH domain

    34. XM_040649015.2 → XP_040504949.1  GTPase-activating Rap/Ran-GAP domain-like protein 3 isoform X28

      UniProtKB/TrEMBL
      A0A3Q2U522
      Conserved Domains (1) summary
      cl02434
      Location:464 → 757
      CNH; CNH domain

    35. XM_040649029.2 → XP_040504963.1  GTPase-activating Rap/Ran-GAP domain-like protein 3 isoform X43

      UniProtKB/TrEMBL
      A0A3Q2U522
      Conserved Domains (1) summary
      cl02434
      Location:464 → 757
      CNH; CNH domain

    36. XM_046901686.1 → XP_046757642.1  GTPase-activating Rap/Ran-GAP domain-like protein 3 isoform X32

      UniProtKB/TrEMBL
      A0A8V1AA11

    37. XM_046901684.1 → XP_046757640.1  GTPase-activating Rap/Ran-GAP domain-like protein 3 isoform X30

      UniProtKB/TrEMBL
      A0A8V1AA11

    38. XM_040649019.2 → XP_040504953.1  GTPase-activating Rap/Ran-GAP domain-like protein 3 isoform X33

      UniProtKB/TrEMBL
      A0A8V1AA11
      Conserved Domains (1) summary
      cl02434
      Location:448 → 741
      CNH; CNH domain

    39. XM_046901688.1 → XP_046757644.1  GTPase-activating Rap/Ran-GAP domain-like protein 3 isoform X35

      UniProtKB/TrEMBL
      A0A8V1AA11

    40. XM_046901687.1 → XP_046757643.1  GTPase-activating Rap/Ran-GAP domain-like protein 3 isoform X34

      UniProtKB/TrEMBL
      A0A8V1AA11

    41. XM_040649003.2 → XP_040504937.1  GTPase-activating Rap/Ran-GAP domain-like protein 3 isoform X16

      UniProtKB/TrEMBL
      A0A3Q2U522
      Conserved Domains (2) summary
      pfam00780
      Location:478 → 780
      CNH; CNH domain
      pfam02145
      Location:206 → 384
      Rap_GAP; Rap/ran-GAP

    42. XM_040649008.2 → XP_040504942.1  GTPase-activating Rap/Ran-GAP domain-like protein 3 isoform X21

      UniProtKB/TrEMBL
      A0A3Q2TWA5, A0A3Q2U522
      Related
      ENSGALP00010042808.1, ENSGALT00010069547.1
      Conserved Domains (1) summary
      cl02434
      Location:472 → 765
      CNH; CNH domain

    43. XM_040649010.2 → XP_040504944.1  GTPase-activating Rap/Ran-GAP domain-like protein 3 isoform X23

      UniProtKB/TrEMBL
      A0A3Q2U522
      Conserved Domains (1) summary
      cl02434
      Location:472 → 765
      CNH; CNH domain

    44. XM_046901685.1 → XP_046757641.1  GTPase-activating Rap/Ran-GAP domain-like protein 3 isoform X31

      UniProtKB/TrEMBL
      A0A3Q2U522

    45. XM_040649032.2 → XP_040504966.1  GTPase-activating Rap/Ran-GAP domain-like protein 3 isoform X45

      UniProtKB/TrEMBL
      A0A8V1AJS0
      Related
      ENSGALP00010042810.1, ENSGALT00010069549.1
      Conserved Domains (1) summary
      cl02434
      Location:464 → 757
      CNH; CNH domain

    46. XM_046901692.1 → XP_046757648.1  GTPase-activating Rap/Ran-GAP domain-like protein 3 isoform X46

      UniProtKB/TrEMBL
      A0A8V1AA11

    47. XM_040649033.2 → XP_040504967.1  GTPase-activating Rap/Ran-GAP domain-like protein 3 isoform X47

      UniProtKB/TrEMBL
      A0A8V1AA11
      Conserved Domains (1) summary
      cl02434
      Location:448 → 741
      CNH; CNH domain

    48. XM_046901690.1 → XP_046757646.1  GTPase-activating Rap/Ran-GAP domain-like protein 3 isoform X44

      UniProtKB/TrEMBL
      A0A8V1AJS0

    49. XM_046901689.1 → XP_046757645.1  GTPase-activating Rap/Ran-GAP domain-like protein 3 isoform X36

      UniProtKB/TrEMBL
      A0A3Q2U522
      Related
      ENSGALP00010042814.1, ENSGALT00010069553.1

    50. XM_046901693.1 → XP_046757649.1  GTPase-activating Rap/Ran-GAP domain-like protein 3 isoform X48

      UniProtKB/TrEMBL
      A0A3Q2U522

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052589.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      10425234..10458736
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5ZJY3.1 GenPept UniProtKB/Swiss-Prot:Q5ZJY3

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials