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    NR6A1 nuclear receptor subfamily 6 group A member 1 [ Gallus gallus (chicken) ]

    Gene ID: 772325, updated on 17-Aug-2024

    Summary

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    Official Symbol
    NR6A1provided by CGNC
    Official Full Name
    nuclear receptor subfamily 6 group A member 1provided by CGNC
    Primary source
    CGNC:727
    See related
    Ensembl:ENSGALG00010028917
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See NR6A1 in Genome Data Viewer
    Location:
    chromosome: 17
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 17 NC_052548.1 (10056523..10121763, complement)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 17 NC_052589.1 (9466964..9532242, complement)

    Chromosome 17 - NC_052548.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112529977 Neighboring gene adhesion G protein-coupled receptor D2 Neighboring gene nuclear receptor subfamily 5 group A member 1 Neighboring gene uncharacterized LOC107052170 Neighboring gene microRNA 181a-2 Neighboring gene microRNA 181b-2 Neighboring gene olfactomedin like 2A Neighboring gene microRNA 6712 Neighboring gene ribosomal protein L35 Neighboring gene suppressor of cancer cell invasion

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Molecular cloning and characterization of the germ cell-related nuclear orphan receptor in chickens. Lee SI, et al. Mol Reprod Dev, 2010 Mar. PMID 20020523
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    nuclear receptor subfamily 6 group A member 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052548.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      10056523..10121763 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015279584.4 → XP_015135070.1  nuclear receptor subfamily 6 group A member 1 isoform X3

      UniProtKB/TrEMBL
      A0A8V1AAT0, A0A8V1AG53
      Related
      ENSGALP00010043091.1, ENSGALT00010069965.1
      Conserved Domains (2) summary
      cd06953
      Location:229 → 441
      NR_LBD_DHR4_like; The ligand binding domain of orphan nuclear receptor Ecdysone-induced receptor DHR4
      cd07169
      Location:24 → 113
      NR_DBD_GCNF_like; DNA-binding domain of Germ cell nuclear factor (GCNF) F1 is composed of two C4-type zinc fingers

    2. XM_015279583.4 → XP_015135069.1  nuclear receptor subfamily 6 group A member 1 isoform X2

      UniProtKB/TrEMBL
      A0A8V1AAT5
      Related
      ENSGALP00010043090.1, ENSGALT00010069964.1
      Conserved Domains (2) summary
      cd06953
      Location:247 → 459
      NR_LBD_DHR4_like; The ligand binding domain of orphan nuclear receptor Ecdysone-induced receptor DHR4
      cd07169
      Location:43 → 132
      NR_DBD_GCNF_like; DNA-binding domain of Germ cell nuclear factor (GCNF) F1 is composed of two C4-type zinc fingers

    3. XM_015279582.4 → XP_015135068.1  nuclear receptor subfamily 6 group A member 1 isoform X1

      UniProtKB/TrEMBL
      A0A8V1AAT5
      Related
      ENSGALP00010043088.1, ENSGALT00010069962.1
      Conserved Domains (2) summary
      cd06953
      Location:248 → 460
      NR_LBD_DHR4_like; The ligand binding domain of orphan nuclear receptor Ecdysone-induced receptor DHR4
      cd07169
      Location:43 → 132
      NR_DBD_GCNF_like; DNA-binding domain of Germ cell nuclear factor (GCNF) F1 is composed of two C4-type zinc fingers

    4. XM_040649148.2 → XP_040505082.1  nuclear receptor subfamily 6 group A member 1 isoform X5

      UniProtKB/TrEMBL
      A0A8V1AKD8
      Related
      ENSGALP00010043084.1, ENSGALT00010069958.1
      Conserved Domains (2) summary
      cd06953
      Location:214 → 426
      NR_LBD_DHR4_like; The ligand binding domain of orphan nuclear receptor Ecdysone-induced receptor DHR4
      cd07169
      Location:10 → 99
      NR_DBD_GCNF_like; DNA-binding domain of Germ cell nuclear factor (GCNF) F1 is composed of two C4-type zinc fingers

    5. XM_001235477.7 → XP_001235478.3  nuclear receptor subfamily 6 group A member 1 isoform X4

      UniProtKB/TrEMBL
      A0A8V1AKD8
      Related
      ENSGALP00010043086.1, ENSGALT00010069960.1
      Conserved Domains (2) summary
      cd06953
      Location:215 → 427
      NR_LBD_DHR4_like; The ligand binding domain of orphan nuclear receptor Ecdysone-induced receptor DHR4
      cd07169
      Location:10 → 99
      NR_DBD_GCNF_like; DNA-binding domain of Germ cell nuclear factor (GCNF) F1 is composed of two C4-type zinc fingers

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052589.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      9466964..9532242 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040685556.2 → XP_040541490.1  nuclear receptor subfamily 6 group A member 1 isoform X3

      UniProtKB/TrEMBL
      A0A8V1AAT0, A0A8V1AG53
      Conserved Domains (2) summary
      cd06953
      Location:229 → 441
      NR_LBD_DHR4_like; The ligand binding domain of orphan nuclear receptor Ecdysone-induced receptor DHR4
      cd07169
      Location:24 → 113
      NR_DBD_GCNF_like; DNA-binding domain of Germ cell nuclear factor (GCNF) F1 is composed of two C4-type zinc fingers

    2. XM_040685555.2 → XP_040541489.1  nuclear receptor subfamily 6 group A member 1 isoform X2

      UniProtKB/TrEMBL
      A0A8V1AAT5
      Conserved Domains (2) summary
      cd06953
      Location:247 → 459
      NR_LBD_DHR4_like; The ligand binding domain of orphan nuclear receptor Ecdysone-induced receptor DHR4
      cd07169
      Location:43 → 132
      NR_DBD_GCNF_like; DNA-binding domain of Germ cell nuclear factor (GCNF) F1 is composed of two C4-type zinc fingers

    3. XM_040685554.2 → XP_040541488.1  nuclear receptor subfamily 6 group A member 1 isoform X1

      UniProtKB/TrEMBL
      A0A8V1AAT5
      Conserved Domains (2) summary
      cd06953
      Location:248 → 460
      NR_LBD_DHR4_like; The ligand binding domain of orphan nuclear receptor Ecdysone-induced receptor DHR4
      cd07169
      Location:43 → 132
      NR_DBD_GCNF_like; DNA-binding domain of Germ cell nuclear factor (GCNF) F1 is composed of two C4-type zinc fingers

    4. XM_040685558.2 → XP_040541492.1  nuclear receptor subfamily 6 group A member 1 isoform X5

      UniProtKB/TrEMBL
      A0A8V1AKD8
      Conserved Domains (2) summary
      cd06953
      Location:214 → 426
      NR_LBD_DHR4_like; The ligand binding domain of orphan nuclear receptor Ecdysone-induced receptor DHR4
      cd07169
      Location:10 → 99
      NR_DBD_GCNF_like; DNA-binding domain of Germ cell nuclear factor (GCNF) F1 is composed of two C4-type zinc fingers

    5. XM_040685557.2 → XP_040541491.1  nuclear receptor subfamily 6 group A member 1 isoform X4

      UniProtKB/TrEMBL
      A0A8V1AKD8
      Conserved Domains (2) summary
      cd06953
      Location:215 → 427
      NR_LBD_DHR4_like; The ligand binding domain of orphan nuclear receptor Ecdysone-induced receptor DHR4
      cd07169
      Location:10 → 99
      NR_DBD_GCNF_like; DNA-binding domain of Germ cell nuclear factor (GCNF) F1 is composed of two C4-type zinc fingers
    Nucleotide Protein Strain
    Heading Accession and Version

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