U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Protein

    • Showing Current items.

    LOC121276994 hippocampus abundant transcript 1 protein-like [ Carcharodon carcharias (great white shark) ]

    Gene ID: 121276994, updated on 7-Dec-2023

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC121276994
    Gene description
    hippocampus abundant transcript 1 protein-like
    See related
    EnsemblRapid:ENSCHSG00020009683
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Carcharodon carcharias
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Elasmobranchii; Galeomorphii; Galeoidea; Lamniformes; Alopiidae; Carcharodon
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC121276994 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    100 current sCarCar2.pri (GCF_017639515.1) 4 NC_054470.1 (38987721..39112310, complement)

    Chromosome 4 - NC_054470.1Genomic Context describing neighboring genes Neighboring gene U8 small nucleolar RNA Neighboring gene leucine rich repeat containing 2 Neighboring gene spindle assembly abnormal protein 6 homolog Neighboring gene spindlin-Z-like Neighboring gene nucleoredoxin like 2

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_054470.1 Chromosome 4 Reference sCarCar2.pri Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    hippocampus abundant transcript 1 protein-like

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Carcharodon carcharias Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference sCarCar2.pri Primary Assembly

    Genomic

    1. NC_054470.1 Reference sCarCar2.pri Primary Assembly

      Range
      38987721..39112310 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_041185802.1 → XP_041041736.1  hippocampus abundant transcript 1 protein-like isoform X2

      Conserved Domains (1) summary
      cd17387
      Location:117 → 523
      MFS_MFSD14; Major facilitator superfamily domain-containing 14A and 14B

    2. XM_041185801.1 → XP_041041735.1  hippocampus abundant transcript 1 protein-like isoform X1

      Related
      ENSCHSP00020016586.1, ENSCHST00020018400.1
      Conserved Domains (1) summary
      cd17387
      Location:118 → 524
      MFS_MFSD14; Major facilitator superfamily domain-containing 14A and 14B
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases