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    LOC121301296 COP9 signalosome complex subunit 4 [ Polyodon spathula (Mississippi paddlefish) ]

    Gene ID: 121301296, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC121301296
    Gene description
    COP9 signalosome complex subunit 4
    See related
    EnsemblRapid:ENSPAHG00005003769
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Polyodon spathula
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Chondrostei; Acipenseriformes; Polyodontidae; Polyodon
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    Genomic context

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    See LOC121301296 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    100 current ASM1765450v1 (GCF_017654505.1) 2 NC_054535.1 (78304000..78314226)

    Chromosome 2 - NC_054535.1Genomic Context describing neighboring genes Neighboring gene protein transport protein Sec31A-like Neighboring gene protein lin-54 homolog Neighboring gene trypsin inhibitor ClTI-1-like Neighboring gene 4-hydroxybenzoate polyprenyltransferase, mitochondrial-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_054535.1 Chromosome 2 Reference ASM1765450v1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    part_of COP9 signalosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    COP9 signalosome complex subunit 4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Polyodon spathula Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM1765450v1 Primary Assembly

    Genomic

    1. NC_054535.1 Reference ASM1765450v1 Primary Assembly

      Range
      78304000..78314226
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_041230557.1 → XP_041086491.1  COP9 signalosome complex subunit 4 isoform X1

      Conserved Domains (2) summary
      COG5071
      Location:1 → 392
      RPN5; 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
      pfam18420
      Location:380 → 421
      CSN4_RPN5_eIF3a; CSN4/RPN5/eIF3a helix turn helix domain

    2. XM_041230574.1 → XP_041086508.1  COP9 signalosome complex subunit 4 isoform X2

      Related
      ENSPAHP00005005497.1, ENSPAHT00005005824.1
      Conserved Domains (2) summary
      COG5071
      Location:1 → 377
      RPN5; 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
      pfam18420
      Location:365 → 406
      CSN4_RPN5_eIF3a; CSN4/RPN5/eIF3a helix turn helix domain

    3. XM_041230566.1 → XP_041086500.1  COP9 signalosome complex subunit 4 isoform X1

      Related
      ENSPAHP00005005496.1, ENSPAHT00005005823.1
      Conserved Domains (2) summary
      COG5071
      Location:1 → 392
      RPN5; 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
      pfam18420
      Location:380 → 421
      CSN4_RPN5_eIF3a; CSN4/RPN5/eIF3a helix turn helix domain
    Nucleotide Protein
    Heading Accession and Version

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