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    LOC121422847 TOM1-like protein 2 [ Lytechinus variegatus (green sea urchin) ]

    Gene ID: 121422847, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC121422847
    Gene description
    TOM1-like protein 2
    See related
    EnsemblRapid:LOC121422847
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Lytechinus variegatus
    Lineage
    Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Temnopleuroida; Toxopneustidae; Lytechinus
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    Genomic context

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    See LOC121422847 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    100 current Lvar_3.0 (GCF_018143015.1) 10 NC_054749.1 (35984854..36014242)

    Chromosome 10 - NC_054749.1Genomic Context describing neighboring genes Neighboring gene leucine-rich repeat protein lrrA-like Neighboring gene centrosomal protein 43-like Neighboring gene sorcin-like Neighboring gene ATP synthase mitochondrial F1 complex assembly factor 2-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_054749.1 Chromosome 10 Reference Lvar_3.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables clathrin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables phosphatidylinositol binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    TOM1-like protein 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Lytechinus variegatus Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Lvar_3.0 Primary Assembly

    Genomic

    1. NC_054749.1 Reference Lvar_3.0 Primary Assembly

      Range
      35984854..36014242
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_041618062.1 → XP_041473996.1  TOM1-like protein 2 isoform X1

      Related
      XP_041473996.1, XM_041618062.1
      Conserved Domains (3) summary
      PHA03247
      Location:293 → 475
      PHA03247; large tegument protein UL36; Provisional
      cd03565
      Location:12 → 146
      VHS_Tom1_like; VHS (Vps27/Hrs/STAM) domain of Tom1 subfamily
      cl03906
      Location:211 → 305
      GAT_SF; GAT domain found in eukaryotic GGAs, metazoan Tom1-like proteins, metazoan STAMs, fungal Vps27, and similar proteins

    2. XM_041618063.1 → XP_041473997.1  TOM1-like protein 2 isoform X2

      Related
      XP_041473997.1, XM_041618063.1
      Conserved Domains (3) summary
      PHA03247
      Location:293 → 475
      PHA03247; large tegument protein UL36; Provisional
      cd03565
      Location:12 → 146
      VHS_Tom1_like; VHS (Vps27/Hrs/STAM) domain of Tom1 subfamily
      cl03906
      Location:211 → 305
      GAT_SF; GAT domain found in eukaryotic GGAs, metazoan Tom1-like proteins, metazoan STAMs, fungal Vps27, and similar proteins

    3. XM_041618064.1 → XP_041473998.1  TOM1-like protein 2 isoform X3

      Related
      XP_041473998.1, XM_041618064.1
      Conserved Domains (3) summary
      PHA03247
      Location:293 → 458
      PHA03247; large tegument protein UL36; Provisional
      cd03565
      Location:12 → 146
      VHS_Tom1_like; VHS (Vps27/Hrs/STAM) domain of Tom1 subfamily
      cl03906
      Location:211 → 305
      GAT_SF; GAT domain found in eukaryotic GGAs, metazoan Tom1-like proteins, metazoan STAMs, fungal Vps27, and similar proteins

    4. XM_041618065.1 → XP_041473999.1  TOM1-like protein 2 isoform X4

      Related
      XP_041473999.1, XM_041618065.1
      Conserved Domains (3) summary
      PHA03247
      Location:293 → 458
      PHA03247; large tegument protein UL36; Provisional
      cd03565
      Location:12 → 146
      VHS_Tom1_like; VHS (Vps27/Hrs/STAM) domain of Tom1 subfamily
      cl03906
      Location:211 → 305
      GAT_SF; GAT domain found in eukaryotic GGAs, metazoan Tom1-like proteins, metazoan STAMs, fungal Vps27, and similar proteins

    5. XM_041618066.1 → XP_041474000.1  TOM1-like protein 2 isoform X5

      Related
      XP_041474000.1, XM_041618066.1
      Conserved Domains (3) summary
      PHA03247
      Location:293 → 475
      PHA03247; large tegument protein UL36; Provisional
      cd03565
      Location:12 → 146
      VHS_Tom1_like; VHS (Vps27/Hrs/STAM) domain of Tom1 subfamily
      cl03906
      Location:211 → 305
      GAT_SF; GAT domain found in eukaryotic GGAs, metazoan Tom1-like proteins, metazoan STAMs, fungal Vps27, and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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