U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Protein

    • Showing Current items.

    LOC121409105 EF-hand calcium-binding domain-containing protein 5-like [ Lytechinus variegatus (green sea urchin) ]

    Gene ID: 121409105, updated on 7-Dec-2023

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC121409105
    Gene description
    EF-hand calcium-binding domain-containing protein 5-like
    See related
    EnsemblRapid:LOC121409105
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Lytechinus variegatus
    Lineage
    Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Temnopleuroida; Toxopneustidae; Lytechinus
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC121409105 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    24
    Annotation release Status Assembly Chr Location
    100 current Lvar_3.0 (GCF_018143015.1) 2 NC_054741.1 (77040539..77068341)

    Chromosome 2 - NC_054741.1Genomic Context describing neighboring genes Neighboring gene NIF3-like protein 1 Neighboring gene homeobox protein MIXL1-like Neighboring gene acyl-CoA dehydrogenase family member 11-like Neighboring gene C-type mannose receptor 2-like

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_054741.1 Chromosome 2 Reference Lvar_3.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    EF-hand calcium-binding domain-containing protein 5-like

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Lytechinus variegatus Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Lvar_3.0 Primary Assembly

    Genomic

    1. NC_054741.1 Reference Lvar_3.0 Primary Assembly

      Range
      77040539..77068341
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_041600923.1 → XP_041456857.1  EF-hand calcium-binding domain-containing protein 5-like isoform X1

      Related
      XP_041456857.1, XM_041600923.1
      Conserved Domains (7) summary
      smart00054
      Location:942 → 969
      EFh; EF-hand, calcium binding motif
      COG1196
      Location:73 → 321
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      PRK10811
      Location:686 → 828
      rne; ribonuclease E; Reviewed
      TIGR00927
      Location:453 → 725
      2A1904; K+-dependent Na+/Ca+ exchanger
      cd15898
      Location:944 → 970
      EFh_PI-PLC; EF-hand motif [structural motif]
      cl28895
      Location:944 → 1009
      EFh_PI-PLC; EF-hand motif found in eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) isozymes
      cl08302
      Location:913 → 967
      EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...

    2. XM_041600926.1 → XP_041456860.1  EF-hand calcium-binding domain-containing protein 5-like isoform X4

      Related
      XP_041456860.1, XM_041600926.1
      Conserved Domains (7) summary
      smart00054
      Location:942 → 969
      EFh; EF-hand, calcium binding motif
      COG1196
      Location:73 → 321
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      PRK10811
      Location:686 → 828
      rne; ribonuclease E; Reviewed
      TIGR00927
      Location:453 → 725
      2A1904; K+-dependent Na+/Ca+ exchanger
      cd15898
      Location:944 → 970
      EFh_PI-PLC; EF-hand motif [structural motif]
      cl28895
      Location:944 → 1009
      EFh_PI-PLC; EF-hand motif found in eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) isozymes
      cl08302
      Location:913 → 967
      EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...

    3. XM_041600924.1 → XP_041456858.1  EF-hand calcium-binding domain-containing protein 5-like isoform X2

      Related
      XP_041456858.1, XM_041600924.1
      Conserved Domains (7) summary
      smart00054
      Location:942 → 969
      EFh; EF-hand, calcium binding motif
      COG1196
      Location:73 → 321
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      PRK10811
      Location:686 → 828
      rne; ribonuclease E; Reviewed
      TIGR00927
      Location:453 → 725
      2A1904; K+-dependent Na+/Ca+ exchanger
      cd15898
      Location:944 → 970
      EFh_PI-PLC; EF-hand motif [structural motif]
      cl28895
      Location:944 → 1009
      EFh_PI-PLC; EF-hand motif found in eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) isozymes
      cl08302
      Location:913 → 967
      EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...

    4. XM_041600927.1 → XP_041456861.1  EF-hand calcium-binding domain-containing protein 5-like isoform X5

      Related
      XP_041456861.1, XM_041600927.1
      Conserved Domains (7) summary
      smart00054
      Location:942 → 969
      EFh; EF-hand, calcium binding motif
      COG1196
      Location:73 → 321
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      PRK10811
      Location:686 → 828
      rne; ribonuclease E; Reviewed
      TIGR00927
      Location:453 → 725
      2A1904; K+-dependent Na+/Ca+ exchanger
      cd15898
      Location:944 → 970
      EFh_PI-PLC; EF-hand motif [structural motif]
      cl28895
      Location:944 → 1009
      EFh_PI-PLC; EF-hand motif found in eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) isozymes
      cl08302
      Location:913 → 967
      EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...

    5. XM_041600925.1 → XP_041456859.1  EF-hand calcium-binding domain-containing protein 5-like isoform X3

      Related
      XP_041456859.1, XM_041600925.1
      Conserved Domains (7) summary
      smart00054
      Location:942 → 969
      EFh; EF-hand, calcium binding motif
      COG1196
      Location:73 → 321
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      PRK10811
      Location:686 → 828
      rne; ribonuclease E; Reviewed
      TIGR00927
      Location:453 → 725
      2A1904; K+-dependent Na+/Ca+ exchanger
      cd15898
      Location:944 → 970
      EFh_PI-PLC; EF-hand motif [structural motif]
      cl28895
      Location:944 → 1009
      EFh_PI-PLC; EF-hand motif found in eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) isozymes
      cl08302
      Location:913 → 967
      EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...

    6. XM_041600928.1 → XP_041456862.1  EF-hand calcium-binding domain-containing protein 5-like isoform X6

      Related
      XP_041456862.1, XM_041600928.1
      Conserved Domains (7) summary
      smart00054
      Location:942 → 969
      EFh; EF-hand, calcium binding motif
      COG1196
      Location:73 → 321
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      PRK10811
      Location:686 → 828
      rne; ribonuclease E; Reviewed
      TIGR00927
      Location:453 → 725
      2A1904; K+-dependent Na+/Ca+ exchanger
      cd15898
      Location:944 → 970
      EFh_PI-PLC; EF-hand motif [structural motif]
      cl28895
      Location:944 → 1009
      EFh_PI-PLC; EF-hand motif found in eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) isozymes
      cl08302
      Location:913 → 967
      EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...

    7. XM_041600929.1 → XP_041456863.1  EF-hand calcium-binding domain-containing protein 5-like isoform X7

      Related
      XP_041456863.1, XM_041600929.1
      Conserved Domains (6) summary
      smart00054
      Location:724 → 751
      EFh; EF-hand, calcium binding motif
      COG1196
      Location:73 → 321
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      PRK13108
      Location:452 → 599
      PRK13108; prolipoprotein diacylglyceryl transferase; Reviewed
      cd15898
      Location:726 → 752
      EFh_PI-PLC; EF-hand motif [structural motif]
      cl28895
      Location:726 → 791
      EFh_PI-PLC; EF-hand motif found in eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) isozymes
      cl08302
      Location:695 → 749
      EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases