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    znf638.L zinc finger protein 638 L homeolog [ Xenopus laevis (African clawed frog) ]

    Gene ID: 108697313, updated on 9-Dec-2024

    Summary

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    Official Symbol
    znf638.L
    Official Full Name
    zinc finger protein 638 L homeolog
    Primary source
    Xenbase:XB-GENE-17333974
    Locus tag
    XELAEV_18004872mg
    See related
    EnsemblRapid:ENSXLAG00005021313 AllianceGenome:Xenbase:XB-GENE-17333974
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Xenopus laevis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
    Also known as
    zfml; np220; zfp638
    Summary
    Orthologous to human ZNF638 (zinc finger protein 638). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See znf638.L in Genome Data Viewer
    Location:
    chromosome: 1L
    Exon count:
    30
    Annotation release Status Assembly Chr Location
    101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 1L NC_054371.1 (11154675..11232646)
    100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 1L NC_030724.1 (6343838..6389143, complement)

    Chromosome 1L - NC_054371.1Genomic Context describing neighboring genes Neighboring gene ADAM metallopeptidase domain 33 L homeolog Neighboring gene uncharacterized LOC108697345 Neighboring gene cell division cycle 25B L homeolog Neighboring gene dysferlin Neighboring gene uncharacterized LOC121401575 Neighboring gene uncharacterized LOC121400495

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    zinc finger protein 638

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_laevis_v10.1 Primary Assembly

    Genomic

    1. NC_054371.1 Reference Xenopus_laevis_v10.1 Primary Assembly

      Range
      11154675..11232646
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_041586923.1 → XP_041442857.1  zinc finger protein 638 isoform X2

      UniProtKB/TrEMBL
      A0A8J1MMA1, A0A974DY30
      Conserved Domains (6) summary
      smart00451
      Location:2549 → 2583
      ZnF_U1; U1-like zinc finger
      COG5271
      Location:1928 → 2405
      MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
      PRK10811
      Location:1329 → 1490
      rne; ribonuclease E; Reviewed
      PRK12678
      Location:1865 → 2104
      PRK12678; transcription termination factor Rho; Provisional
      TIGR01649
      Location:958 → 1023
      hnRNP-L_PTB; hnRNP-L/PTB/hephaestus splicing factor family
      pfam09606
      Location:105 → 387
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal

    2. XM_041586915.1 → XP_041442849.1  zinc finger protein 638 isoform X1

      UniProtKB/TrEMBL
      A0A8J1MM57, A0A974DY30
      Related
      ENSXLAP00005062671.1, ENSXLAT00005064124.1
      Conserved Domains (6) summary
      smart00451
      Location:2559 → 2593
      ZnF_U1; U1-like zinc finger
      COG5271
      Location:1938 → 2415
      MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
      PRK10811
      Location:1339 → 1500
      rne; ribonuclease E; Reviewed
      PRK12678
      Location:1875 → 2114
      PRK12678; transcription termination factor Rho; Provisional
      TIGR01649
      Location:968 → 1033
      hnRNP-L_PTB; hnRNP-L/PTB/hephaestus splicing factor family
      pfam09606
      Location:105 → 397
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal

    3. XM_041586930.1 → XP_041442864.1  zinc finger protein 638 isoform X3

      UniProtKB/TrEMBL
      A0A8J1MMB1, A0A974DY30
      Related
      ENSXLAP00005062530.1, ENSXLAT00005063983.1
      Conserved Domains (6) summary
      smart00451
      Location:2458 → 2492
      ZnF_U1; U1-like zinc finger
      COG5271
      Location:1837 → 2314
      MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
      PRK10811
      Location:1238 → 1399
      rne; ribonuclease E; Reviewed
      PRK12678
      Location:1774 → 2013
      PRK12678; transcription termination factor Rho; Provisional
      TIGR01649
      Location:867 → 932
      hnRNP-L_PTB; hnRNP-L/PTB/hephaestus splicing factor family
      pfam09606
      Location:4 → 296
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal

    4. XM_041586933.1 → XP_041442867.1  zinc finger protein 638 isoform X3

      UniProtKB/TrEMBL
      A0A8J1MMB1, A0A974DY30
      Conserved Domains (6) summary
      smart00451
      Location:2458 → 2492
      ZnF_U1; U1-like zinc finger
      COG5271
      Location:1837 → 2314
      MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
      PRK10811
      Location:1238 → 1399
      rne; ribonuclease E; Reviewed
      PRK12678
      Location:1774 → 2013
      PRK12678; transcription termination factor Rho; Provisional
      TIGR01649
      Location:867 → 932
      hnRNP-L_PTB; hnRNP-L/PTB/hephaestus splicing factor family
      pfam09606
      Location:4 → 296
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal

    5. XM_041586928.1 → XP_041442862.1  zinc finger protein 638 isoform X3

      UniProtKB/TrEMBL
      A0A8J1MMB1, A0A974DY30
      Related
      ENSXLAP00005062555.1, ENSXLAT00005064008.1
      Conserved Domains (6) summary
      smart00451
      Location:2458 → 2492
      ZnF_U1; U1-like zinc finger
      COG5271
      Location:1837 → 2314
      MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
      PRK10811
      Location:1238 → 1399
      rne; ribonuclease E; Reviewed
      PRK12678
      Location:1774 → 2013
      PRK12678; transcription termination factor Rho; Provisional
      TIGR01649
      Location:867 → 932
      hnRNP-L_PTB; hnRNP-L/PTB/hephaestus splicing factor family
      pfam09606
      Location:4 → 296
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal

    6. XM_041586937.1 → XP_041442871.1  zinc finger protein 638 isoform X3

      UniProtKB/TrEMBL
      A0A8J1MMB1, A0A974DY30
      Conserved Domains (6) summary
      smart00451
      Location:2458 → 2492
      ZnF_U1; U1-like zinc finger
      COG5271
      Location:1837 → 2314
      MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
      PRK10811
      Location:1238 → 1399
      rne; ribonuclease E; Reviewed
      PRK12678
      Location:1774 → 2013
      PRK12678; transcription termination factor Rho; Provisional
      TIGR01649
      Location:867 → 932
      hnRNP-L_PTB; hnRNP-L/PTB/hephaestus splicing factor family
      pfam09606
      Location:4 → 296
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    Nucleotide Protein Strain
    Heading Accession and Version

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