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    mcph1.L microcephalin 1 L homeolog [ Xenopus laevis (African clawed frog) ]

    Gene ID: 108716177, updated on 4-Nov-2024

    Summary

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    Official Symbol
    mcph1.L
    Official Full Name
    microcephalin 1 L homeolog
    Primary source
    Xenbase:XB-GENE-17330482
    Locus tag
    XELAEV_180273321mg
    See related
    AllianceGenome:Xenbase:XB-GENE-17330482
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Xenopus laevis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
    Also known as
    brit1
    Summary
    Human ortholog(s) of this gene implicated in breast cancer; endometrial cancer; microcephaly; primary autosomal recessive microcephaly; and primary autosomal recessive microcephaly 1. Orthologous to human MCPH1 (microcephalin 1). [provided by Alliance of Genome Resources, Nov 2024]
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    Genomic context

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    See mcph1.L in Genome Data Viewer
    Location:
    chromosome: 5L
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 5L NC_054379.1 (101593766..101728705, complement)
    100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 5L NC_030732.1 (90117136..90237376)

    Chromosome 5L - NC_054379.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 14A L homeolog Neighboring gene 1-acylglycerol-3-phosphate O-acyltransferase 5 L homeolog Neighboring gene angiopoietin 2 L homeolog Neighboring gene CUB and sushi domain-containing protein 1-like Neighboring gene myomesin 2 L homeolog

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    LOW QUALITY PROTEIN: microcephalin-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_laevis_v10.1 Primary Assembly

    Genomic

    1. NC_054379.1 Reference Xenopus_laevis_v10.1 Primary Assembly

      Range
      101593766..101728705 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_041563195.1 → XP_041419129.1  LOW QUALITY PROTEIN: microcephalin-like

      UniProtKB/TrEMBL
      A0A8J1KSD0
      Conserved Domains (3) summary
      cd17716
      Location:18 → 96
      BRCT_microcephalin_rpt1; first (N-terminal) BRCT domain of microcephalin and similar proteins
      cd17736
      Location:633 → 707
      BRCT_microcephalin_rpt2; second BRCT domain of microcephalin and similar proteins
      cd17751
      Location:733 → 809
      BRCT_microcephalin_rpt3; third BRCT domain of microcephalin and similar proteins
    Nucleotide Protein Strain
    Heading Accession and Version

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