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    carmil1.S capping protein regulator and myosin 1 linker 1 S homeolog [ Xenopus laevis (African clawed frog) ]

    Gene ID: 108720131, updated on 4-Jan-2025

    Summary

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    Official Symbol
    carmil1.S
    Official Full Name
    capping protein regulator and myosin 1 linker 1 S homeolog
    Primary source
    Xenbase:XB-GENE-17334927
    Locus tag
    XELAEV_18033517mg
    See related
    EnsemblRapid:ENSXLAG00005017006 AllianceGenome:Xenbase:XB-GENE-17334927
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Xenopus laevis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
    Also known as
    lrrc16a
    Summary
    Orthologous to human CARMIL1 (capping protein regulator and myosin 1 linker 1). [provided by Alliance of Genome Resources, Jan 2025]
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    Genomic context

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    See carmil1.S in Genome Data Viewer
    Location:
    chromosome: 6S
    Exon count:
    39
    Annotation release Status Assembly Chr Location
    101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 6S NC_054382.1 (83062032..83219819, complement)
    100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 6S NC_030735.1 (74848605..74924714, complement)

    Chromosome 6S - NC_054382.1Genomic Context describing neighboring genes Neighboring gene par-6 family cell polarity regulator gamma S homeolog Neighboring gene secretagogin, EF-hand calcium binding protein S homeolog Neighboring gene RHO family interacting cell polarization regulator 2 S homeolog Neighboring gene geminin, DNA replication inhibitor S homeolog

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    F-actin-uncapping protein LRRC16A; capping protein regulator and myosin 1 linker 1 S homeolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_laevis_v10.1 Primary Assembly

    Genomic

    1. NC_054382.1 Reference Xenopus_laevis_v10.1 Primary Assembly

      Range
      83062032..83219819 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_041567768.1 → XP_041423702.1  F-actin-uncapping protein LRRC16A isoform X6

      UniProtKB/TrEMBL
      A0A8J1L2D4, A0A974CJE6
      Conserved Domains (5) summary
      sd00033
      Location:245 → 272
      LRR_RI; leucine-rich repeat [structural motif]
      sd00034
      Location:129 → 153
      LRR_AMN1; leucine-rich repeat [structural motif]
      pfam16000
      Location:691 → 986
      CARMIL_C; CARMIL C-terminus
      pfam17888
      Location:1 → 25
      Carm_PH; Carmil pleckstrin homology domain
      cl39015
      Location:205 → 530
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...

    2. XM_041567765.1 → XP_041423699.1  F-actin-uncapping protein LRRC16A isoform X3

      UniProtKB/TrEMBL
      A0A8J1L3Z6, A0A974CJE6
      Conserved Domains (3) summary
      sd00033
      Location:339 → 366
      LRR_RI; leucine-rich repeat [structural motif]
      sd00034
      Location:223 → 247
      LRR_AMN1; leucine-rich repeat [structural motif]
      cl39015
      Location:299 → 624
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...

    3. XM_041567764.1 → XP_041423698.1  F-actin-uncapping protein LRRC16A isoform X2

      UniProtKB/TrEMBL
      A0A8J1L2D0, A0A974CJE6
      Conserved Domains (3) summary
      sd00033
      Location:339 → 366
      LRR_RI; leucine-rich repeat [structural motif]
      sd00034
      Location:223 → 247
      LRR_AMN1; leucine-rich repeat [structural motif]
      cl39015
      Location:299 → 624
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...

    4. XM_041567763.1 → XP_041423697.1  F-actin-uncapping protein LRRC16A isoform X1

      UniProtKB/TrEMBL
      A0A8J1L2C9, A0A974CJE6
      Related
      ENSXLAP00005050092.1, ENSXLAT00005051233.1
      Conserved Domains (3) summary
      sd00033
      Location:339 → 366
      LRR_RI; leucine-rich repeat [structural motif]
      sd00034
      Location:223 → 247
      LRR_AMN1; leucine-rich repeat [structural motif]
      cl39015
      Location:299 → 624
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...

    5. XM_041567767.1 → XP_041423701.1  F-actin-uncapping protein LRRC16A isoform X5

      UniProtKB/TrEMBL
      A0A8J1L2C8, A0A974CJE6
      Conserved Domains (3) summary
      sd00033
      Location:339 → 366
      LRR_RI; leucine-rich repeat [structural motif]
      sd00034
      Location:223 → 247
      LRR_AMN1; leucine-rich repeat [structural motif]
      cl39015
      Location:299 → 624
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...

    6. XM_041567766.1 → XP_041423700.1  F-actin-uncapping protein LRRC16A isoform X4

      UniProtKB/TrEMBL
      A0A8J1L541, A0A974CJE6
      Related
      ENSXLAP00005050103.1, ENSXLAT00005051244.1
      Conserved Domains (4) summary
      sd00033
      Location:339 → 366
      LRR_RI; leucine-rich repeat [structural motif]
      sd00034
      Location:223 → 247
      LRR_AMN1; leucine-rich repeat [structural motif]
      pfam04929
      Location:1276 → 1364
      Herpes_DNAp_acc; Herpes DNA replication accessory factor
      cl39015
      Location:299 → 624
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    Nucleotide Protein Strain
    Heading Accession and Version

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