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    LSM2 LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated [ Vulpes lagopus (Arctic fox) ]

    Gene ID: 121486888, updated on 22-Mar-2024

    Summary

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    Gene symbol
    LSM2
    Gene description
    LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Vulpes lagopus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Vulpes
    Orthologs
    human mouse all
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    Genomic context

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    See LSM2 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    100 current ASM1834538v1 (GCF_018345385.1) 1 NC_054824.1 (71812513..71822429)

    Chromosome 1 - NC_054824.1Genomic Context describing neighboring genes Neighboring gene heat shock 70 kDa protein 1 Neighboring gene heat shock protein family A (Hsp70) member 1A Neighboring gene heat shock protein family A (Hsp70) member 1 like Neighboring gene valyl-tRNA synthetase 1 Neighboring gene transcription factor BTF3 homolog 4 Neighboring gene von Willebrand factor A domain containing 7

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_054824.1 Chromosome 1 Reference ASM1834538v1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of Lsm1-7-Pat1 complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in P-body IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of U4/U6 x U5 tri-snRNP complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of U6 snRNP IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of catalytic step 2 spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of precatalytic spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    U6 snRNA-associated Sm-like protein LSm2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Vulpes lagopus Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM1834538v1 Primary Assembly

    Genomic

    1. NC_054824.1 Reference ASM1834538v1 Primary Assembly

      Range
      71812513..71822429
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_041748303.1 → XP_041604237.1  U6 snRNA-associated Sm-like protein LSm2

      Conserved Domains (1) summary
      cd01725
      Location:124 → 212
      LSm2; Like-Sm protein 2
    Nucleotide Protein Strain
    Heading Accession and Version

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