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    LOC121584234 RNA-binding protein 25-like [ Coregonus clupeaformis (lake whitefish) ]

    Gene ID: 121584234, updated on 28-May-2024

    Summary

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    Gene symbol
    LOC121584234
    Gene description
    RNA-binding protein 25-like
    See related
    EnsemblRapid:ENSCCFG00005006009
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Coregonus clupeaformis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Coregoninae; Coregonus
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    Genomic context

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    See LOC121584234 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    101 current ASM2061545v1 (GCF_020615455.1) Unplaced Scaffold NW_025533466.1 (386065..397043)
    100 previous assembly ASM1839867v1 (GCF_018398675.1) 16 NC_055082.1 (52356579..52372973, complement)

    NW_025533466.1Genomic Context describing neighboring genes Neighboring gene importin 11 Neighboring gene trifunctional nucleotide phosphoesterase protein YfkN-like Neighboring gene 5-hydroxytryptamine (serotonin) receptor 1A a Neighboring gene regulator of G protein signaling 7 binding protein a

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ubiquitin conjugating enzyme binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin protein ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in norepinephrine metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of proteasomal ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein polyubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in serotonin metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    RNA-binding protein 25-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Coregonus clupeaformis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM2061545v1 Primary Assembly

    Genomic

    1. NW_025533466.1 Reference ASM2061545v1 Primary Assembly

      Range
      386065..397043
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_041900062.2 → XP_041755996.1  RNA-binding protein 25-like

      Related
      ENSCCFP00005012544.1, ENSCCFT00005013320.1
      Conserved Domains (3) summary
      PRK12678
      Location:51 → 151
      PRK12678; transcription termination factor Rho; Provisional
      TIGR01642
      Location:114 → 199
      U2AF_lg; U2 snRNP auxilliary factor, large subunit, splicing factor
      cd16554
      Location:404 → 447
      RING-HC_RNF180; RING finger, HC subclass, found in RING finger protein 180 (RNF180) and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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