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    LOC102904491 oxidoreductase HTATIP2 [ Peromyscus maniculatus bairdii (prairie deer mouse) ]

    Gene ID: 102904491, updated on 16-Nov-2023

    Summary

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    Gene symbol
    LOC102904491
    Gene description
    oxidoreductase HTATIP2
    See related
    Ensembl:ENSPEMG00000009365
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Peromyscus maniculatus bairdii (sub-species: bairdii)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Neotominae; Peromyscus
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    Genomic context

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    See LOC102904491 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    102 current HU_Pman_2.1.3 (GCF_003704035.1) 1 NC_056008.1 (44044665..44059361, complement)
    101 previous assembly Pman_1.0 (GCF_000500345.1) Unplaced Scaffold NW_006501480.1 (376010..390933, complement)

    Chromosome 1 - NC_056008.1Genomic Context describing neighboring genes Neighboring gene protein arginine methyltransferase 3 Neighboring gene HIV-1 Tat interactive protein 2 Neighboring gene uncharacterized LOC121826046 Neighboring gene chromatin complexes subunit BAP18-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in import into nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    oxidoreductase HTATIP2
    Names
    HIV-1 Tat interactive protein 2, 30kDa

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Peromyscus maniculatus bairdii Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference HU_Pman_2.1.3 Primary Assembly

    Genomic

    1. NC_056008.1 Reference HU_Pman_2.1.3 Primary Assembly

      Range
      44044665..44059361 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006990105.3 → XP_006990167.1  oxidoreductase HTATIP2 isoform X2

      See identical proteins and their annotated locations for XP_006990167.1

      UniProtKB/TrEMBL
      A0A6J0EA01
      Conserved Domains (1) summary
      cd05250
      Location:19 → 231
      CC3_like_SDR_a; CC3(TIP30)-like, atypical (a) SDRs

    2. XM_006990104.3 → XP_006990166.1  oxidoreductase HTATIP2 isoform X2

      See identical proteins and their annotated locations for XP_006990166.1

      UniProtKB/TrEMBL
      A0A6J0EA01
      Conserved Domains (1) summary
      cd05250
      Location:19 → 231
      CC3_like_SDR_a; CC3(TIP30)-like, atypical (a) SDRs

    3. XM_042277045.1 → XP_042132979.1  oxidoreductase HTATIP2 isoform X2

      UniProtKB/TrEMBL
      A0A6J0EA01
      Conserved Domains (1) summary
      cd05250
      Location:19 → 231
      CC3_like_SDR_a; CC3(TIP30)-like, atypical (a) SDRs

    4. XM_042277053.1 → XP_042132987.1  oxidoreductase HTATIP2 isoform X2

      UniProtKB/TrEMBL
      A0A6J0EA01
      Conserved Domains (1) summary
      cd05250
      Location:19 → 231
      CC3_like_SDR_a; CC3(TIP30)-like, atypical (a) SDRs

    5. XM_006990103.3 → XP_006990165.1  oxidoreductase HTATIP2 isoform X1

      UniProtKB/TrEMBL
      A0A6I9LTJ0
      Conserved Domains (2) summary
      cd05250
      Location:52 → 264
      CC3_like_SDR_a; CC3(TIP30)-like, atypical (a) SDRs
      COG0702
      Location:54 → 225
      YbjT; Uncharacterized conserved protein YbjT, contains NAD(P)-binding and DUF2867 domains [General function prediction only]

    6. XM_016008388.2 → XP_015863874.1  oxidoreductase HTATIP2 isoform X2

      UniProtKB/TrEMBL
      A0A6J0EA01
      Related
      ENSPEMP00000007407.1
      Conserved Domains (1) summary
      cd05250
      Location:19 → 231
      CC3_like_SDR_a; CC3(TIP30)-like, atypical (a) SDRs
    Nucleotide Protein
    Heading Accession and Version

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