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    LOC8039788 putative oxidoreductase GLYR1 homolog [ Ixodes scapularis (black-legged tick) ]

    Gene ID: 8039788, updated on 31-Jul-2024

    Summary

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    Gene symbol
    LOC8039788
    Gene description
    putative oxidoreductase GLYR1 homolog
    See related
    VectorBase:ISCP_001132; EnsemblRapid:LOC8039788
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Ixodes scapularis
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Chelicerata; Arachnida; Acari; Parasitiformes; Ixodida; Ixodoidea; Ixodidae; Ixodinae; Ixodes
    Orthologs
    fruit fly all
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    Genomic context

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    See LOC8039788 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    103 current ASM1692078v2 (GCF_016920785.2) Unplaced Scaffold NW_024609839.1 (72578806..72661436)
    102 previous assembly Ixodes_scapularus_ComboLowHiFi (GCF_016920785.1) Unplaced Scaffold NW_024388207.1 (40009..69238, complement)

    NW_024609839.1Genomic Context describing neighboring genes Neighboring gene TBC1 domain family member 19 Neighboring gene putative Ras-related protein Rab-33 Neighboring gene leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 2 Neighboring gene protein ALP1-like Neighboring gene cytochrome P450 2H1-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Transcriptome of the female synganglion of the black-legged tick Ixodes scapularis (Acari: Ixodidae) with comparison between Illumina and 454 systems. Egekwu N, et al. PLoS One, 2014. PMID 25075967, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables NAD binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables NADP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    putative oxidoreductase GLYR1 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Ixodes scapularis Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM1692078v2

    Genomic

    1. NW_024609839.1 Reference ASM1692078v2

      Range
      72578806..72661436
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_042289946.1 → XP_042145880.1  putative oxidoreductase GLYR1 homolog isoform X2

      Related
      XP_042145880.1, XM_042289946.1
      Conserved Domains (2) summary
      COG2084
      Location:269 → 548
      MmsB; 3-hydroxyisobutyrate dehydrogenase or related beta-hydroxyacid dehydrogenase [Lipid transport and metabolism]
      cl02554
      Location:22 → 107
      PWWP; The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins ...

    2. XM_042289945.1 → XP_042145879.1  putative oxidoreductase GLYR1 homolog isoform X1

      Related
      XP_042145879.1, XM_042289945.1
      Conserved Domains (2) summary
      COG2084
      Location:291 → 570
      MmsB; 3-hydroxyisobutyrate dehydrogenase or related beta-hydroxyacid dehydrogenase [Lipid transport and metabolism]
      cl02554
      Location:5 → 90
      PWWP; The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins ...
    Nucleotide Protein
    Heading Accession and Version

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