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    atad2b ATPase family AAA domain containing 2B [ Solea senegalensis (Senegalese sole) ]

    Gene ID: 122783621, updated on 22-Mar-2024

    Summary

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    Gene symbol
    atad2b
    Gene description
    ATPase family AAA domain containing 2B
    Locus tag
    JOB18_006065
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Solea senegalensis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Soleidae; Solea
    Orthologs
    human zebrafish all
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    Genomic context

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    See atad2b in Genome Data Viewer
    Location:
    chromosome: LG17
    Exon count:
    28
    Annotation release Status Assembly LG Location
    100 current IFAPA_SoseM_1 (GCF_019176455.1) LG17 NC_058037.1 (6391604..6456879)

    Linkage Group LG17 - NC_058037.1Genomic Context describing neighboring genes Neighboring gene MFSD2 lysolipid transporter B, sphingolipid Neighboring gene UBX domain protein 2A Neighboring gene uncharacterized LOC122783666 Neighboring gene delta-like 4 (Drosophila)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_058037.1 Chromosome LG17 Reference IFAPA_SoseM_1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables chromatin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables histone binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ATPase family AAA domain-containing protein 2B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Solea senegalensis Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IFAPA_SoseM_1 Primary Assembly

    Genomic

    1. NC_058037.1 Reference IFAPA_SoseM_1 Primary Assembly

      Range
      6391604..6456879
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_044048366.1 → XP_043904301.1  ATPase family AAA domain-containing protein 2B

      Conserved Domains (3) summary
      cd05528
      Location:939 → 1050
      Bromo_AAA; Bromodomain; sub-family co-occurring with AAA domains. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. The structure(2DKW) in this ...
      COG0464
      Location:371 → 639
      SpoVK; AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms]
      cl38936
      Location:732 → 867
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
    Nucleotide Protein
    Heading Accession and Version

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