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    rbm17 RNA binding motif protein 17 [ Callorhinchus milii (elephant shark) ]

    Gene ID: 103187919, updated on 11-Mar-2024

    Summary

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    Gene symbol
    rbm17
    Gene description
    RNA binding motif protein 17
    See related
    Ensembl:ENSCMIG00000012400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Callorhinchus milii
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Holocephali; Chimaeriformes; Callorhinchidae; Callorhinchus
    Orthologs
    human zebrafish all
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    Genomic context

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    See rbm17 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    101 current IMCB_Cmil_1.0 (GCF_018977255.1) Unplaced Scaffold NW_024704746.1 (67057391..67071817, complement)
    100 previous assembly Callorhinchus_milii-6.1.3 (GCF_000165045.1) Unplaced Scaffold NW_006890244.1 (284843..297368)

    NW_024704746.1Genomic Context describing neighboring genes Neighboring gene protein kinase C, theta Neighboring gene 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 Neighboring gene proline and serine-rich protein 2 Neighboring gene enoyl CoA hydratase domain containing 3 Neighboring gene transfer RNA alanine (anticodon GGC)

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Elephant shark genome provides unique insights into gnathostome evolution. Venkatesh B, et al. Nature, 2014 Jan 9. PMID 24402279, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in alternative mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in mRNA cis splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of precatalytic spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    splicing factor 45

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Callorhinchus milii Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IMCB_Cmil_1.0 Primary Assembly

    Genomic

    1. NW_024704746.1 Reference IMCB_Cmil_1.0 Primary Assembly

      Range
      67057391..67071817 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_042335306.1 → XP_042191240.1  splicing factor 45

      UniProtKB/TrEMBL
      A0A4W3IE98, V9KUP7
      Conserved Domains (2) summary
      pfam01585
      Location:246 → 290
      G-patch; G-patch domain
      cd12647
      Location:318 → 412
      RRM_UHM_SPF45; RNA recognition motif (RRM) found in UHM domain of 45 kDa-splicing factor (SPF45) and similar proteins

    2. XM_042335304.1 → XP_042191238.1  splicing factor 45

      UniProtKB/TrEMBL
      A0A4W3IE98, V9KUP7
      Conserved Domains (2) summary
      pfam01585
      Location:246 → 290
      G-patch; G-patch domain
      cd12647
      Location:318 → 412
      RRM_UHM_SPF45; RNA recognition motif (RRM) found in UHM domain of 45 kDa-splicing factor (SPF45) and similar proteins

    3. XM_042335303.1 → XP_042191237.1  splicing factor 45

      UniProtKB/TrEMBL
      A0A4W3IE98, V9KUP7
      Conserved Domains (2) summary
      pfam01585
      Location:246 → 290
      G-patch; G-patch domain
      cd12647
      Location:318 → 412
      RRM_UHM_SPF45; RNA recognition motif (RRM) found in UHM domain of 45 kDa-splicing factor (SPF45) and similar proteins

    4. XM_042335302.1 → XP_042191236.1  splicing factor 45

      UniProtKB/TrEMBL
      A0A4W3IE98, V9KUP7
      Conserved Domains (2) summary
      pfam01585
      Location:246 → 290
      G-patch; G-patch domain
      cd12647
      Location:318 → 412
      RRM_UHM_SPF45; RNA recognition motif (RRM) found in UHM domain of 45 kDa-splicing factor (SPF45) and similar proteins

    5. XM_007907638.2 → XP_007905829.1  splicing factor 45

      UniProtKB/TrEMBL
      A0A4W3IE98, V9KUP7
      Related
      ENSCMIP00000028579.1
      Conserved Domains (2) summary
      pfam01585
      Location:246 → 290
      G-patch; G-patch domain
      cd12647
      Location:318 → 412
      RRM_UHM_SPF45; RNA recognition motif (RRM) found in UHM domain of 45 kDa-splicing factor (SPF45) and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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