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    LOC121878757 tropomyosin [ Homarus americanus (American lobster) ]

    Gene ID: 121878757, updated on 1-Jul-2024

    Summary

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    Gene symbol
    LOC121878757
    Gene description
    tropomyosin
    Locus tag
    Hamer_G019486
    See related
    EnsemblRapid:LOC121878757
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Homarus americanus
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Crustacea; Multicrustacea; Malacostraca; Eumalacostraca; Eucarida; Decapoda; Pleocyemata; Astacidea; Nephropoidea; Nephropidae; Homarus
    Also known as
    TM1; fTm; sTm1; Tm1-L2; Tm1-L3; Tm1-L4
    Orthologs
    fruit fly all
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    Genomic context

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    See LOC121878757 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    22
    Annotation release Status Assembly Chr Location
    100 current GMGI_Hamer_2.0 (GCF_018991925.1) Unplaced Scaffold NW_024745671.1 (1642065..1701182, complement)

    NW_024745671.1Genomic Context describing neighboring genes Neighboring gene U6 snRNA phosphodiesterase-like Neighboring gene tRNA-splicing endonuclease subunit SEN2-like Neighboring gene MORF-related gene 15 Neighboring gene transfer RNA alanine (anticodon CGC) Neighboring gene trithorax group protein osa-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_024745671 Unplaced Scaffold Reference GMGI_Hamer_2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Cloning of tropomyosins from lobster (Homarus americanus) striated muscles: fast and slow isoforms may be generated from the same transcript. Mykles DL, et al. J Muscle Res Cell Motil, 1998 Feb. PMID 9536438
    2. Fiber polymorphism in skeletal muscles of the American lobster, Homarus americanus: continuum between slow-twitch (S1) and slow-tonic (S2) fibers. Medler S, et al. J Exp Biol, 2004 Jul. PMID 15235004
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables actin filament binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in actin filament organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in muscle contraction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in actin filament IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    tropomyosin; tropomyosin-1, isoforms 9A/A/B
    Names
    Tropomyosin-like 2
    Tropomyosin-like 3
    fast tropomyosin isoform
    putative Tropomyosin-like 4
    slow tropomyosin isoform
    slow-tonic S2 tropomyosin

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Homarus americanus Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GMGI_Hamer_2.0 Primary Assembly

    Genomic

    1. NW_024745671.1 Reference GMGI_Hamer_2.0 Primary Assembly

      Range
      1642065..1701182 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_042385148.1 → XP_042241082.1  tropomyosin isoform X24

      Related
      XP_042241082.1, XM_042385148.1
      Conserved Domains (1) summary
      COG1196
      Location:21 → 282
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

    2. XM_042385156.1 → XP_042241090.1  tropomyosin isoform X31

      Related
      XP_042241090.1, XM_042385156.1
      Conserved Domains (1) summary
      TIGR02168
      Location:24 → 276
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type

    3. XM_042385151.1 → XP_042241085.1  tropomyosin isoform X27

      Related
      XP_042241085.1, XM_042385151.1
      Conserved Domains (1) summary
      TIGR02168
      Location:24 → 276
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type

    4. XM_042385145.1 → XP_042241079.1  tropomyosin isoform X21

      UniProtKB/TrEMBL
      Q6E7L4
      Related
      XP_042241079.1, XM_042385145.1
      Conserved Domains (1) summary
      pfam00261
      Location:48 → 282
      Tropomyosin

    5. XM_042385155.1 → XP_042241089.1  tropomyosin isoform X30

      Related
      XP_042241089.1, XM_042385155.1
      Conserved Domains (1) summary
      TIGR02168
      Location:24 → 276
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type

    6. XM_042385147.1 → XP_042241081.1  tropomyosin isoform X23

      Related
      XP_042241081.1, XM_042385147.1
      Conserved Domains (1) summary
      COG1196
      Location:21 → 282
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

    7. XM_042385146.1 → XP_042241080.1  tropomyosin isoform X22

      Related
      XP_042241080.1, XM_042385146.1
      Conserved Domains (1) summary
      COG1196
      Location:21 → 282
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

    8. XM_042385142.1 → XP_042241076.1  tropomyosin isoform X19

      Related
      XP_042241076.1, XM_042385142.1
      Conserved Domains (1) summary
      pfam00261
      Location:48 → 282
      Tropomyosin

    9. XM_042385144.1 → XP_042241078.1  tropomyosin isoform X20

      UniProtKB/Swiss-Prot
      O44119, O44120
      Related
      XP_042241078.1, XM_042385144.1
      Conserved Domains (1) summary
      pfam00261
      Location:48 → 282
      Tropomyosin

    10. XM_042385153.1 → XP_042241087.1  tropomyosin isoform X19

      Related
      XP_042241087.1, XM_042385153.1
      Conserved Domains (1) summary
      pfam00261
      Location:48 → 282
      Tropomyosin

    11. XM_042385140.1 → XP_042241074.1  tropomyosin isoform X17

      Related
      XP_042241074.1, XM_042385140.1
      Conserved Domains (1) summary
      COG1196
      Location:147 → 360
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

    12. XM_042385141.1 → XP_042241075.1  tropomyosin isoform X18

      Related
      XP_042241075.1, XM_042385141.1
      Conserved Domains (1) summary
      COG1196
      Location:147 → 360
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

    13. XM_042385135.1 → XP_042241069.1  tropomyosin isoform X12

      Related
      XP_042241069.1, XM_042385135.1
      Conserved Domains (1) summary
      COG1196
      Location:156 → 361
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

    14. XM_042385126.1 → XP_042241060.1  tropomyosin isoform X5

      Related
      XP_042241060.1, XM_042385126.1
      Conserved Domains (1) summary
      COG1196
      Location:156 → 361
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

    15. XM_042385136.1 → XP_042241070.1  tropomyosin isoform X13

      Related
      XP_042241070.1, XM_042385136.1
      Conserved Domains (1) summary
      COG1196
      Location:156 → 361
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

    16. XM_042385131.1 → XP_042241065.1  tropomyosin isoform X8

      Related
      XP_042241065.1, XM_042385131.1
      Conserved Domains (1) summary
      COG1196
      Location:156 → 361
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

    17. XM_042385125.1 → XP_042241059.1  tropomyosin isoform X4

      Related
      XP_042241059.1, XM_042385125.1
      Conserved Domains (1) summary
      COG1196
      Location:156 → 361
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

    18. XM_042385122.1 → XP_042241056.1  tropomyosin isoform X1

      Related
      XP_042241056.1, XM_042385122.1
      Conserved Domains (1) summary
      COG1196
      Location:156 → 361
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

    19. XM_042385128.1 → XP_042241062.1  tropomyosin isoform X6

      Related
      XP_042241062.1, XM_042385128.1
      Conserved Domains (1) summary
      COG1196
      Location:147 → 360
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

    20. XM_042385132.1 → XP_042241066.1  tropomyosin isoform X9

      Related
      XP_042241066.1, XM_042385132.1
      Conserved Domains (1) summary
      TIGR02168
      Location:146 → 355
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type

    21. XM_042385130.1 → XP_042241064.1  tropomyosin isoform X7

      Related
      XP_042241064.1, XM_042385130.1
      Conserved Domains (1) summary
      COG1196
      Location:160 → 362
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

    22. XM_042385160.1 → XP_042241094.1  tropomyosin isoform X34

      Related
      XP_042241094.1, XM_042385160.1
      Conserved Domains (1) summary
      COG1196
      Location:9 → 249
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

    23. XM_042385129.1 → XP_042241063.1  tropomyosin isoform X2

      Related
      XP_042241063.1, XM_042385129.1
      Conserved Domains (1) summary
      TIGR02168
      Location:146 → 362
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type

    24. XM_042385163.1 → XP_042241097.1  tropomyosin isoform X37

      Related
      XP_042241097.1, XM_042385163.1
      Conserved Domains (1) summary
      COG1196
      Location:21 → 282
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

    25. XM_042385150.1 → XP_042241084.1  tropomyosin isoform X26

      Related
      XP_042241084.1, XM_042385150.1
      Conserved Domains (1) summary
      COG1196
      Location:21 → 280
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

    26. XM_042385158.1 → XP_042241092.1  tropomyosin isoform X33

      Related
      XP_042241092.1, XM_042385158.1
      Conserved Domains (1) summary
      TIGR02168
      Location:23 → 283
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type

    27. XM_042385149.1 → XP_042241083.1  tropomyosin isoform X25

      Related
      XP_042241083.1, XM_042385149.1
      Conserved Domains (1) summary
      COG1196
      Location:21 → 280
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

    28. XM_042385157.1 → XP_042241091.1  tropomyosin isoform X32

      Related
      XP_042241091.1, XM_042385157.1
      Conserved Domains (1) summary
      TIGR02168
      Location:23 → 283
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type

    29. XM_042385152.1 → XP_042241086.1  tropomyosin isoform X28

      Related
      XP_042241086.1, XM_042385152.1
      Conserved Domains (2) summary
      PHA02562
      Location:184 → 284
      46; endonuclease subunit; Provisional
      TIGR02168
      Location:1 → 233
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type

    30. XM_042385154.1 → XP_042241088.1  tropomyosin isoform X29

      Related
      XP_042241088.1, XM_042385154.1
      Conserved Domains (1) summary
      TIGR02168
      Location:23 → 283
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type

    31. XM_042385139.1 → XP_042241073.1  tropomyosin isoform X16

      Related
      XP_042241073.1, XM_042385139.1
      Conserved Domains (1) summary
      COG1196
      Location:147 → 359
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

    32. XM_042385137.1 → XP_042241071.1  tropomyosin isoform X14

      Related
      XP_042241071.1, XM_042385137.1
      Conserved Domains (1) summary
      COG1196
      Location:156 → 359
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

    33. XM_042385133.1 → XP_042241067.1  tropomyosin isoform X10

      Related
      XP_042241067.1, XM_042385133.1
      Conserved Domains (1) summary
      TIGR02168
      Location:146 → 362
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type

    34. XM_042385138.1 → XP_042241072.1  tropomyosin isoform X15

      Related
      XP_042241072.1, XM_042385138.1
      Conserved Domains (1) summary
      COG1196
      Location:156 → 359
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

    35. XM_042385134.1 → XP_042241068.1  tropomyosin isoform X11

      Related
      XP_042241068.1, XM_042385134.1
      Conserved Domains (1) summary
      TIGR02168
      Location:146 → 362
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type

    36. XM_042385124.1 → XP_042241058.1  tropomyosin isoform X3

      Related
      XP_042241058.1, XM_042385124.1
      Conserved Domains (1) summary
      COG1196
      Location:156 → 359
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

    37. XM_042385123.1 → XP_042241057.1  tropomyosin isoform X2

      Related
      XP_042241057.1, XM_042385123.1
      Conserved Domains (1) summary
      TIGR02168
      Location:146 → 362
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type

    38. XM_042385162.1 → XP_042241096.1  tropomyosin-1, isoforms 9A/A/B isoform X36

      Related
      XP_042241096.1, XM_042385162.1
      Conserved Domains (1) summary
      TIGR02168
      Location:12 → 251
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type

    39. XM_042385161.1 → XP_042241095.1  tropomyosin-1, isoforms 9A/A/B isoform X35

      Related
      XP_042241095.1, XM_042385161.1
      Conserved Domains (1) summary
      TIGR02168
      Location:12 → 251
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O44119.1 GenPept UniProtKB/Swiss-Prot:O44119

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