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    PKD serine/threonine-protein kinase D3 [ Homarus americanus (American lobster) ]

    Gene ID: 121858346, updated on 6-Jul-2024

    Summary

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    Gene symbol
    PKD
    Gene description
    serine/threonine-protein kinase D3
    Locus tag
    Hamer_G001482
    See related
    EnsemblRapid:LOC121858346
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Homarus americanus
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Crustacea; Multicrustacea; Malacostraca; Eumalacostraca; Eucarida; Decapoda; Pleocyemata; Astacidea; Nephropoidea; Nephropidae; Homarus
    Also known as
    Prkd3-L1
    Orthologs
    fruit fly all
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    Genomic context

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    See PKD in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    100 current GMGI_Hamer_2.0 (GCF_018991925.1) Unplaced Scaffold NW_024716703.1 (23903782..24106188, complement)

    NW_024716703.1Genomic Context describing neighboring genes Neighboring gene trypsin-1-like Neighboring gene uncharacterized LOC121858414 Neighboring gene zwei Ig domain protein zig-8-like Neighboring gene flocculation protein FLO11-like Neighboring gene Ras GTPase activating protein 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_024716703 Unplaced Scaffold Reference GMGI_Hamer_2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Neuropeptidergic Signaling in the American Lobster Homarus americanus: New Insights from High-Throughput Nucleotide Sequencing. Christie AE, et al. PLoS One, 2015. PMID 26716450, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein serine/threonine kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    serine/threonine-protein kinase D3-like
    Names
    Serine/threonine-protein kinase D3-like 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Homarus americanus Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GMGI_Hamer_2.0 Primary Assembly

    Genomic

    1. NW_024716703.1 Reference GMGI_Hamer_2.0 Primary Assembly

      Range
      23903782..24106188 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_042354759.1 → XP_042210693.1  serine/threonine-protein kinase D3-like isoform X4

      Related
      XP_042210693.1, XM_042354759.1
      Conserved Domains (3) summary
      smart00109
      Location:200 → 249
      C1; Protein kinase C conserved region 1 (C1) domains (Cysteine-rich domains)
      cd01239
      Location:319 → 446
      PH_PKD; Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain
      cd14082
      Location:474 → 733
      STKc_PKD; Catalytic domain of the Serine/Threonine kinase, Protein Kinase D

    2. XM_042354756.1 → XP_042210690.1  serine/threonine-protein kinase D3-like isoform X2

      Related
      XP_042210690.1, XM_042354756.1
      Conserved Domains (3) summary
      smart00109
      Location:235 → 284
      C1; Protein kinase C conserved region 1 (C1) domains (Cysteine-rich domains)
      cd01239
      Location:354 → 481
      PH_PKD; Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain
      cd14082
      Location:509 → 768
      STKc_PKD; Catalytic domain of the Serine/Threonine kinase, Protein Kinase D

    3. XM_042354757.1 → XP_042210691.1  serine/threonine-protein kinase D3-like isoform X2

      Related
      XP_042210691.1, XM_042354757.1
      Conserved Domains (3) summary
      smart00109
      Location:235 → 284
      C1; Protein kinase C conserved region 1 (C1) domains (Cysteine-rich domains)
      cd01239
      Location:354 → 481
      PH_PKD; Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain
      cd14082
      Location:509 → 768
      STKc_PKD; Catalytic domain of the Serine/Threonine kinase, Protein Kinase D

    4. XM_042354758.1 → XP_042210692.1  serine/threonine-protein kinase D3-like isoform X3

      Related
      XP_042210692.1, XM_042354758.1
      Conserved Domains (3) summary
      smart00109
      Location:158 → 207
      C1; Protein kinase C conserved region 1 (C1) domains (Cysteine-rich domains)
      cd01239
      Location:277 → 404
      PH_PKD; Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain
      cd14082
      Location:432 → 691
      STKc_PKD; Catalytic domain of the Serine/Threonine kinase, Protein Kinase D

    5. XM_042354755.1 → XP_042210689.1  serine/threonine-protein kinase D3-like isoform X1

      Related
      XP_042210689.1, XM_042354755.1
      Conserved Domains (3) summary
      smart00109
      Location:193 → 242
      C1; Protein kinase C conserved region 1 (C1) domains (Cysteine-rich domains)
      cd01239
      Location:312 → 439
      PH_PKD; Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain
      cd14082
      Location:467 → 726
      STKc_PKD; Catalytic domain of the Serine/Threonine kinase, Protein Kinase D
    Nucleotide Protein
    Heading Accession and Version

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