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    SYNJ1 synaptojanin 1 [ Centrocercus urophasianus (Greater sage-grouse) ]

    Gene ID: 122155635, updated on 22-Mar-2024

    Summary

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    Gene symbol
    SYNJ1
    Gene description
    synaptojanin 1
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Centrocercus urophasianus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Tetraoninae; Centrocercus
    Orthologs
    human mouse all
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    Genomic context

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    See SYNJ1 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    34
    Annotation release Status Assembly Chr Location
    100 current USGS_Curo_1.0 (GCF_019232065.1) Unplaced Scaffold NW_024884364.1 (28661317..28721438, complement)

    NW_024884364.1Genomic Context describing neighboring genes Neighboring gene eva-1 homolog C Neighboring gene cilia and flagella associated protein 298 Neighboring gene PAX3 and PAX7 binding protein 1 Neighboring gene exosomal polycystin 1 interacting protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_024884364 Unplaced Scaffold Reference USGS_Curo_1.0

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in brain development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in phosphatidylinositol dephosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in synaptic vesicle endocytosis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in perinuclear region of cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in presynapse IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    synaptojanin-1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Centrocercus urophasianus Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference USGS_Curo_1.0

    Genomic

    1. NW_024884364.1 Reference USGS_Curo_1.0

      Range
      28661317..28721438 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_042809660.1 → XP_042665594.1  synaptojanin-1 isoform X5

      Conserved Domains (4) summary
      cd09098
      Location:528 → 863
      INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
      PHA03247
      Location:1123 → 1372
      PHA03247; large tegument protein UL36; Provisional
      COG5329
      Location:42 → 483
      COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
      cl17169
      Location:862 → 1004
      RRM_SF; RNA recognition motif (RRM) superfamily

    2. XM_042809661.1 → XP_042665595.1  synaptojanin-1 isoform X5

      Conserved Domains (4) summary
      cd09098
      Location:528 → 863
      INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
      PHA03247
      Location:1123 → 1372
      PHA03247; large tegument protein UL36; Provisional
      COG5329
      Location:42 → 483
      COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
      cl17169
      Location:862 → 1004
      RRM_SF; RNA recognition motif (RRM) superfamily

    3. XM_042809662.1 → XP_042665596.1  synaptojanin-1 isoform X5

      Conserved Domains (4) summary
      cd09098
      Location:528 → 863
      INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
      PHA03247
      Location:1123 → 1372
      PHA03247; large tegument protein UL36; Provisional
      COG5329
      Location:42 → 483
      COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
      cl17169
      Location:862 → 1004
      RRM_SF; RNA recognition motif (RRM) superfamily

    4. XM_042809659.1 → XP_042665593.1  synaptojanin-1 isoform X4

      Conserved Domains (5) summary
      cd09098
      Location:567 → 902
      INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
      PHA03247
      Location:1154 → 1506
      PHA03247; large tegument protein UL36; Provisional
      COG3147
      Location:1162 → 1263
      DedD; Cell division protein DedD (periplasmic protein involved in septation) [Cell cycle control, cell division, chromosome partitioning]
      COG5329
      Location:81 → 522
      COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
      cl17169
      Location:901 → 1043
      RRM_SF; RNA recognition motif (RRM) superfamily

    5. XM_042809657.1 → XP_042665591.1  synaptojanin-1 isoform X2

      Conserved Domains (5) summary
      cd09098
      Location:567 → 902
      INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
      PHA03247
      Location:1090 → 1519
      PHA03247; large tegument protein UL36; Provisional
      PHA03378
      Location:1162 → 1284
      PHA03378; EBNA-3B; Provisional
      COG5329
      Location:81 → 522
      COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
      cl17169
      Location:901 → 1043
      RRM_SF; RNA recognition motif (RRM) superfamily

    6. XM_042809658.1 → XP_042665592.1  synaptojanin-1 isoform X3

      Conserved Domains (5) summary
      cd09098
      Location:567 → 902
      INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
      PHA03247
      Location:1093 → 1318
      PHA03247; large tegument protein UL36; Provisional
      COG3147
      Location:1169 → 1276
      DedD; Cell division protein DedD (periplasmic protein involved in septation) [Cell cycle control, cell division, chromosome partitioning]
      COG5329
      Location:81 → 522
      COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
      cl17169
      Location:901 → 1043
      RRM_SF; RNA recognition motif (RRM) superfamily

    7. XM_042809656.1 → XP_042665590.1  synaptojanin-1 isoform X1

      Conserved Domains (4) summary
      cd09098
      Location:567 → 902
      INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
      PHA03247
      Location:1162 → 1411
      PHA03247; large tegument protein UL36; Provisional
      COG5329
      Location:58 → 522
      COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
      cl17169
      Location:901 → 1043
      RRM_SF; RNA recognition motif (RRM) superfamily

    8. XM_042809663.1 → XP_042665597.1  synaptojanin-1 isoform X6

      Conserved Domains (5) summary
      cd09098
      Location:567 → 902
      INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
      PHA03247
      Location:1094 → 1262
      PHA03247; large tegument protein UL36; Provisional
      COG5329
      Location:81 → 522
      COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
      pfam05109
      Location:1089 → 1450
      Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
      cl17169
      Location:901 → 1043
      RRM_SF; RNA recognition motif (RRM) superfamily

    9. XM_042809664.1 → XP_042665598.1  synaptojanin-1 isoform X7

      Conserved Domains (4) summary
      cd09098
      Location:472 → 807
      INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
      PHA03247
      Location:1067 → 1316
      PHA03247; large tegument protein UL36; Provisional
      COG5329
      Location:4 → 427
      COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
      cl17169
      Location:806 → 948
      RRM_SF; RNA recognition motif (RRM) superfamily
    Nucleotide Protein
    Heading Accession and Version

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