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    NISCH nischarin [ Lagopus leucura (white-tailed ptarmigan) ]

    Gene ID: 122187675, updated on 22-Mar-2024

    Summary

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    Gene symbol
    NISCH
    Gene description
    nischarin
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Lagopus leucura
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Tetraoninae; Lagopus
    Orthologs
    human mouse all
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    Genomic context

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    See NISCH in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    22
    Annotation release Status Assembly Chr Location
    100 current USGS_WTPT01 (GCF_019238085.1) Unplaced Scaffold NW_024962296.1 (1954919..1986915)

    NW_024962296.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC122187719 Neighboring gene troponin C1, slow skeletal and cardiac type Neighboring gene ras homolog family member A Neighboring gene glutathione peroxidase 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_024962296 Unplaced Scaffold Reference USGS_WTPT01

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables integrin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables phosphatidylinositol binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein kinase binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    nischarin

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Lagopus leucura Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference USGS_WTPT01

    Genomic

    1. NW_024962296.1 Reference USGS_WTPT01

      Range
      1954919..1986915
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_042885403.1 → XP_042741337.1  nischarin isoform X1

      Conserved Domains (3) summary
      cd06875
      Location:11 → 126
      PX_IRAS; The phosphoinositide binding Phox Homology domain of the Imidazoline Receptor Antisera-Selected
      COG4886
      Location:281 → 415
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      sd00033
      Location:286 → 308
      LRR_RI; leucine-rich repeat [structural motif]

    2. XM_042885404.1 → XP_042741338.1  nischarin isoform X2

      Conserved Domains (3) summary
      cd06875
      Location:11 → 126
      PX_IRAS; The phosphoinositide binding Phox Homology domain of the Imidazoline Receptor Antisera-Selected
      COG4886
      Location:281 → 415
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      sd00033
      Location:286 → 308
      LRR_RI; leucine-rich repeat [structural motif]

    3. XM_042885405.1 → XP_042741339.1  nischarin isoform X3

      Conserved Domains (3) summary
      cd06875
      Location:11 → 126
      PX_IRAS; The phosphoinositide binding Phox Homology domain of the Imidazoline Receptor Antisera-Selected
      COG4886
      Location:281 → 415
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      sd00033
      Location:286 → 308
      LRR_RI; leucine-rich repeat [structural motif]

    4. XM_042885406.1 → XP_042741340.1  nischarin isoform X4

      Conserved Domains (3) summary
      cd06875
      Location:11 → 126
      PX_IRAS; The phosphoinositide binding Phox Homology domain of the Imidazoline Receptor Antisera-Selected
      COG4886
      Location:281 → 415
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      sd00033
      Location:286 → 308
      LRR_RI; leucine-rich repeat [structural motif]

    5. XM_042885407.1 → XP_042741341.1  nischarin isoform X5

      Conserved Domains (3) summary
      cd06875
      Location:11 → 126
      PX_IRAS; The phosphoinositide binding Phox Homology domain of the Imidazoline Receptor Antisera-Selected
      COG4886
      Location:281 → 415
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      sd00033
      Location:286 → 308
      LRR_RI; leucine-rich repeat [structural motif]

    6. XM_042885409.1 → XP_042741343.1  nischarin isoform X6

      Conserved Domains (3) summary
      cd06875
      Location:11 → 126
      PX_IRAS; The phosphoinositide binding Phox Homology domain of the Imidazoline Receptor Antisera-Selected
      COG4886
      Location:281 → 415
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      sd00033
      Location:286 → 308
      LRR_RI; leucine-rich repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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