U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Protein

    • Showing Current items.

    CNTN4 contactin 4 [ Panthera leo (lion) ]

    Gene ID: 122214587, updated on 22-Mar-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    CNTN4
    Gene description
    contactin 4
    See related
    EnsemblRapid:ENSPLXG00005005979
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Panthera leo
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Felidae; Pantherinae; Panthera
    Orthologs
    human all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See CNTN4 in Genome Data Viewer
    Location:
    chromosome: A2
    Exon count:
    30
    Annotation release Status Assembly Chr Location
    100 current P.leo_Ple1_pat1.1 (GCF_018350215.1) A2 NC_056680.1 (43979290..44872874)

    Chromosome A2 - NC_056680.1Genomic Context describing neighboring genes Neighboring gene rRNA-processing protein FCF1 homolog Neighboring gene T-complex protein 1 subunit zeta-like Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC122214589 Neighboring gene uncharacterized LOC122214590 Neighboring gene uncharacterized LOC122214588 Neighboring gene interleukin 5 receptor subunit alpha Neighboring gene tRNA nucleotidyl transferase 1 Neighboring gene cereblon

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_056680.1 Chromosome A2 Reference P.leo_Ple1_pat1.1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cell-cell adhesion mediator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in brain development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cell-cell adhesion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    contactin-4

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Panthera leo Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference P.leo_Ple1_pat1.1 Primary Assembly

    Genomic

    1. NC_056680.1 Reference P.leo_Ple1_pat1.1 Primary Assembly

      Range
      43979290..44872874
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_042929999.1 → XP_042785933.1  contactin-4 isoform X1

      UniProtKB/TrEMBL
      A0A8C8WLK4
      Conserved Domains (4) summary
      cd00063
      Location:597 → 690
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      cd00096
      Location:225 → 230
      Ig; Ig strand A [structural motif]
      cd05853
      Location:496 → 597
      Ig6_Contactin-4; Sixth immunoglobulin (Ig) domain of contactin-4
      cl11960
      Location:225 → 313
      Ig; Immunoglobulin domain

    2. XM_042929997.1 → XP_042785931.1  contactin-4 isoform X1

      UniProtKB/TrEMBL
      A0A8C8WLK4
      Conserved Domains (4) summary
      cd00063
      Location:597 → 690
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      cd00096
      Location:225 → 230
      Ig; Ig strand A [structural motif]
      cd05853
      Location:496 → 597
      Ig6_Contactin-4; Sixth immunoglobulin (Ig) domain of contactin-4
      cl11960
      Location:225 → 313
      Ig; Immunoglobulin domain

    3. XM_042929996.1 → XP_042785930.1  contactin-4 isoform X1

      UniProtKB/TrEMBL
      A0A8C8WLK4
      Related
      ENSPLXP00005007322.1, ENSPLXT00005012343.1
      Conserved Domains (4) summary
      cd00063
      Location:597 → 690
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      cd00096
      Location:225 → 230
      Ig; Ig strand A [structural motif]
      cd05853
      Location:496 → 597
      Ig6_Contactin-4; Sixth immunoglobulin (Ig) domain of contactin-4
      cl11960
      Location:225 → 313
      Ig; Immunoglobulin domain

    4. XM_042930003.1 → XP_042785937.1  contactin-4 isoform X2

      Conserved Domains (3) summary
      cd00063
      Location:596 → 689
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      cd00096
      Location:496 → 502
      Ig; Ig strand A [structural motif]
      cl11960
      Location:496 → 596
      Ig; Immunoglobulin domain

    5. XM_042929998.1 → XP_042785932.1  contactin-4 isoform X1

      UniProtKB/TrEMBL
      A0A8C8WLK4
      Conserved Domains (4) summary
      cd00063
      Location:597 → 690
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      cd00096
      Location:225 → 230
      Ig; Ig strand A [structural motif]
      cd05853
      Location:496 → 597
      Ig6_Contactin-4; Sixth immunoglobulin (Ig) domain of contactin-4
      cl11960
      Location:225 → 313
      Ig; Immunoglobulin domain

    6. XM_042930000.1 → XP_042785934.1  contactin-4 isoform X1

      UniProtKB/TrEMBL
      A0A8C8WLK4
      Conserved Domains (4) summary
      cd00063
      Location:597 → 690
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      cd00096
      Location:225 → 230
      Ig; Ig strand A [structural motif]
      cd05853
      Location:496 → 597
      Ig6_Contactin-4; Sixth immunoglobulin (Ig) domain of contactin-4
      cl11960
      Location:225 → 313
      Ig; Immunoglobulin domain

    7. XM_042930001.1 → XP_042785935.1  contactin-4 isoform X1

      UniProtKB/TrEMBL
      A0A8C8WLK4
      Related
      ENSPLXP00005007323.1, ENSPLXT00005012344.1
      Conserved Domains (4) summary
      cd00063
      Location:597 → 690
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      cd00096
      Location:225 → 230
      Ig; Ig strand A [structural motif]
      cd05853
      Location:496 → 597
      Ig6_Contactin-4; Sixth immunoglobulin (Ig) domain of contactin-4
      cl11960
      Location:225 → 313
      Ig; Immunoglobulin domain

    8. XM_042930004.1 → XP_042785938.1  contactin-4 isoform X3

      Conserved Domains (4) summary
      cd00063
      Location:451 → 544
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      cd00096
      Location:79 → 84
      Ig; Ig strand A [structural motif]
      cd05853
      Location:350 → 451
      Ig6_Contactin-4; Sixth immunoglobulin (Ig) domain of contactin-4
      cl11960
      Location:79 → 167
      Ig; Immunoglobulin domain

    9. XM_042930005.1 → XP_042785939.1  contactin-4 isoform X4

      Conserved Domains (5) summary
      smart00409
      Location:196 → 275
      IG; Immunoglobulin
      smart00410
      Location:285 → 374
      IG_like; Immunoglobulin like
      cd00063
      Location:378 → 471
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      cd00096
      Location:114 → 118
      Ig; Ig strand B [structural motif]
      cl11960
      Location:99 → 182
      Ig; Immunoglobulin domain
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.