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    APOBEC1 apolipoprotein B mRNA editing enzyme catalytic subunit 1 [ Panthera tigris (tiger) ]

    Gene ID: 102951006, updated on 15-Nov-2024

    Summary

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    Gene symbol
    APOBEC1
    Gene description
    apolipoprotein B mRNA editing enzyme catalytic subunit 1
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Panthera tigris
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Felidae; Pantherinae; Panthera
    Orthologs
    human mouse all
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    Genomic context

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    See APOBEC1 in Genome Data Viewer
    Location:
    chromosome: B4
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    102 current P.tigris_Pti1_mat1.1 (GCF_018350195.1) B4 NC_056666.1 (42478015..42487421)
    101 previous assembly PanTig1.0 (GCF_000464555.1) Unplaced Scaffold NW_006711996.1 (371214..373667, complement)

    Chromosome B4 - NC_056666.1Genomic Context describing neighboring genes Neighboring gene mitochondrial assembly of ribosomal large subunit protein 1-like Neighboring gene growth differentiation factor 3 Neighboring gene activation induced cytidine deaminase Neighboring gene ribosomal protein L18-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables cytidine deaminase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cytidine to uridine editing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    C->U-editing enzyme APOBEC-1
    Names
    apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Panthera tigris Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference P.tigris_Pti1_mat1.1 Primary Assembly

    Genomic

    1. NC_056666.1 Reference P.tigris_Pti1_mat1.1 Primary Assembly

      Range
      42478015..42487421
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_007089679.2 → XP_007089741.2  C->U-editing enzyme APOBEC-1

      UniProtKB/TrEMBL
      A0A8C9MC84
      Conserved Domains (2) summary
      pfam05240
      Location:108 → 186
      APOBEC_C; APOBEC-like C-terminal domain
      pfam18769
      Location:44 → 144
      APOBEC1
    Nucleotide Protein
    Heading Accession and Version

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