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    UV8b_05344 uncharacterized protein [ Ustilaginoidea virens ]

    Gene ID: 66066121, updated on 30-Nov-2023

    Summary

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    Gene symbol
    UV8b_05344
    Gene description
    uncharacterized protein
    Locus tag
    UV8b_05344
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Ustilaginoidea virens (strain: UV-8b, nat-host: Oryza sativa)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes; Hypocreomycetidae; Hypocreales; Clavicipitaceae; Ustilaginoidea
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    Genomic context

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    See UV8b_05344 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    4
    Sequence:
    Chromosome: 4; NC_057319.1 (3225469..3228465, complement)

    Chromosome 4 - NC_057319.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_057319.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in DNA double-strand break attachment to nuclear envelope IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in double-strand break repair IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of Cul8-RING ubiquitin ligase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_057319.1 Reference assembly

      Range
      3225469..3228465 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_043142841.1 → XP_042998774.1  uncharacterized protein UV8b_05344 [Ustilaginoidea virens]

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A8E5HT76
      Conserved Domains (6) summary
      cd00027
      Location:21 → 86
      BRCT; C-terminal domain of the breast cancer suppressor protein (BRCA1) and related domains
      cd17743
      Location:627 → 702
      BRCT_BRC1_like_rpt5; fifth BRCT domain of Schizosaccharomyces pombe BRCT-containing protein 1 (BRC1) and similar proteins
      cd18436
      Location:106 → 179
      BRCT_BRC1_like_rpt2; second BRCT domain of Schizosaccharomyces pombe BRCT-containing protein 1 (BRC1) and similar proteins
      cd18437
      Location:245 → 320
      BRCT_BRC1_like_rpt3; third BRCT domain of Schizosaccharomyces pombe BRCT-containing protein 1 (BRC1) and similar proteins
      cd18438
      Location:340 → 407
      BRCT_BRC1_like_rpt4; fourth BRCT domain of Schizosaccharomyces pombe BRCT-containing protein 1 (BRC1) and similar proteins
      cd18439
      Location:718 → 842
      BRCT_BRC1_like_rpt6; sixth (C-terminal) BRCT domain of Schizosaccharomyces pombe BRCT-containing protein 1 (BRC1) and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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