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    aplp1 amyloid beta (A4) precursor-like protein 1 [ Puntigrus tetrazona (Sumatra barb) ]

    Gene ID: 122359576, updated on 8-May-2024

    Summary

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    Gene symbol
    aplp1
    Gene description
    amyloid beta (A4) precursor-like protein 1
    See related
    EnsemblRapid:ENSPRZG00000021671
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Puntigrus tetrazona
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Smiliogastrinae; Puntigrus
    Orthologs
    human zebrafish all
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    Genomic context

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    See aplp1 in Genome Data Viewer
    Location:
    chromosome: 15
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    100 current ASM1883169v1 (GCF_018831695.1) 15 NC_056713.1 (20027371..20074259)

    Chromosome 15 - NC_056713.1Genomic Context describing neighboring genes Neighboring gene kirre like nephrin family adhesion molecule 3, like Neighboring gene ST14 transmembrane serine protease matriptase Neighboring gene uncharacterized LOC122359578 Neighboring gene uncharacterized LOC122359580 Neighboring gene chymotrypsin-like protease CTRL-1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_056713.1 Chromosome 15 Reference ASM1883169v1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables alpha-2A adrenergic receptor binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables alpha-2B adrenergic receptor binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables alpha-2C adrenergic receptor binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables heparin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transition metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in axonogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in central nervous system development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi apparatus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    amyloid-like protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Puntigrus tetrazona Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM1883169v1 Primary Assembly

    Genomic

    1. NC_056713.1 Reference ASM1883169v1 Primary Assembly

      Range
      20027371..20074259
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_043259928.1 → XP_043115863.1  amyloid-like protein 1 isoform X1

      Conserved Domains (1) summary
      smart00006
      Location:37 → 194
      A4_EXTRA; amyloid A4

    2. XM_043259929.1 → XP_043115864.1  amyloid-like protein 1 isoform X2

      Related
      ENSPRZP00000043959.1, ENSPRZT00000050866.1
      Conserved Domains (1) summary
      smart00006
      Location:37 → 194
      A4_EXTRA; amyloid A4
    Nucleotide Protein
    Heading Accession and Version

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