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    hdac5 histone deacetylase 5 [ Puntigrus tetrazona (Sumatra barb) ]

    Gene ID: 122335929, updated on 8-May-2024

    Summary

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    Gene symbol
    hdac5
    Gene description
    histone deacetylase 5
    See related
    EnsemblRapid:ENSPRZG00000009143
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Puntigrus tetrazona
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Smiliogastrinae; Puntigrus
    Orthologs
    human zebrafish all
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    Genomic context

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    See hdac5 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    28
    Annotation release Status Assembly Chr Location
    100 current ASM1883169v1 (GCF_018831695.1) 3 NC_056701.1 (22268986..22336227)

    Chromosome 3 - NC_056701.1Genomic Context describing neighboring genes Neighboring gene tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2a Neighboring gene cytochrome b561 Neighboring gene slit homolog 2 protein Neighboring gene LSM12 homolog a

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_056701.1 Chromosome 3 Reference ASM1883169v1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables histone deacetylase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in chromatin organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of histone deacetylase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    histone deacetylase 5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Puntigrus tetrazona Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM1883169v1 Primary Assembly

    Genomic

    1. NC_056701.1 Reference ASM1883169v1 Primary Assembly

      Range
      22268986..22336227
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_043233677.1 → XP_043089612.1  histone deacetylase 5 isoform X8

      Conserved Domains (2) summary
      cd10164
      Location:44 → 131
      ClassIIa_HDAC5_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC5, a Class IIa histone deacetylase
      cd10007
      Location:639 → 1058
      HDAC5; Histone deacetylase 5

    2. XM_043233675.1 → XP_043089610.1  histone deacetylase 5 isoform X6

      Related
      ENSPRZP00000010888.1, ENSPRZT00000016609.1
      Conserved Domains (2) summary
      cd10164
      Location:52 → 139
      ClassIIa_HDAC5_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC5, a Class IIa histone deacetylase
      cd10007
      Location:647 → 1066
      HDAC5; Histone deacetylase 5

    3. XM_043233676.1 → XP_043089611.1  histone deacetylase 5 isoform X7

      Conserved Domains (2) summary
      cd10164
      Location:51 → 138
      ClassIIa_HDAC5_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC5, a Class IIa histone deacetylase
      cd10007
      Location:646 → 1065
      HDAC5; Histone deacetylase 5

    4. XM_043233678.1 → XP_043089613.1  histone deacetylase 5 isoform X9

      Related
      ENSPRZP00000010768.1, ENSPRZT00000016489.1
      Conserved Domains (2) summary
      cd10164
      Location:34 → 121
      ClassIIa_HDAC5_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC5, a Class IIa histone deacetylase
      cd10007
      Location:629 → 1048
      HDAC5; Histone deacetylase 5

    5. XM_043233679.1 → XP_043089614.1  histone deacetylase 5 isoform X9

      Related
      ENSPRZP00000010794.1, ENSPRZT00000016515.1
      Conserved Domains (2) summary
      cd10164
      Location:34 → 121
      ClassIIa_HDAC5_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC5, a Class IIa histone deacetylase
      cd10007
      Location:629 → 1048
      HDAC5; Histone deacetylase 5

    6. XM_043233669.1 → XP_043089604.1  histone deacetylase 5 isoform X1

      Conserved Domains (2) summary
      cd10164
      Location:95 → 208
      ClassIIa_HDAC5_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC5, a Class IIa histone deacetylase
      cd10007
      Location:715 → 1134
      HDAC5; Histone deacetylase 5

    7. XM_043233673.1 → XP_043089608.1  histone deacetylase 5 isoform X5

      Conserved Domains (2) summary
      cd10164
      Location:95 → 182
      ClassIIa_HDAC5_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC5, a Class IIa histone deacetylase
      cl17011
      Location:690 → 1069
      Arginase_HDAC; Arginase-like and histone-like hydrolases

    8. XM_043233680.1 → XP_043089615.1  histone deacetylase 5 isoform X10

      Conserved Domains (2) summary
      cd10164
      Location:94 → 181
      ClassIIa_HDAC5_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC5, a Class IIa histone deacetylase
      cd10007
      Location:688 → 1107
      HDAC5; Histone deacetylase 5

    9. XM_043233670.1 → XP_043089605.1  histone deacetylase 5 isoform X2

      Related
      ENSPRZP00000010845.1, ENSPRZT00000016566.1
      Conserved Domains (2) summary
      cd10164
      Location:95 → 182
      ClassIIa_HDAC5_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC5, a Class IIa histone deacetylase
      cd10007
      Location:690 → 1109
      HDAC5; Histone deacetylase 5

    10. XM_043233672.1 → XP_043089607.1  histone deacetylase 5 isoform X4

      Conserved Domains (2) summary
      cd10164
      Location:95 → 182
      ClassIIa_HDAC5_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC5, a Class IIa histone deacetylase
      cd10007
      Location:689 → 1108
      HDAC5; Histone deacetylase 5

    11. XM_043233671.1 → XP_043089606.1  histone deacetylase 5 isoform X3

      Conserved Domains (2) summary
      cd10164
      Location:94 → 181
      ClassIIa_HDAC5_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC5, a Class IIa histone deacetylase
      cd10007
      Location:689 → 1108
      HDAC5; Histone deacetylase 5
    Nucleotide Protein
    Heading Accession and Version

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