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    rpl27 ribosomal protein L27 [ Puntigrus tetrazona (Sumatra barb) ]

    Gene ID: 122342173, updated on 8-May-2024

    Summary

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    Gene symbol
    rpl27
    Gene description
    ribosomal protein L27
    See related
    EnsemblRapid:ENSPRZG00000017641
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Puntigrus tetrazona
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Smiliogastrinae; Puntigrus
    Orthologs
    human zebrafish all
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    Genomic context

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    See rpl27 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    100 current ASM1883169v1 (GCF_018831695.1) 3 NC_056701.1 (10794230..10797272, complement)

    Chromosome 3 - NC_056701.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA U83B Neighboring gene ribosomal protein L3 Neighboring gene solute carrier family 25 member 39 Neighboring gene RUN domain containing 1 Neighboring gene granulin a

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_056701.1 Chromosome 3 Reference ASM1883169v1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of cytosolic large ribosomal subunit IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    60S ribosomal protein L27

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Puntigrus tetrazona Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM1883169v1 Primary Assembly

    Genomic

    1. NC_056701.1 Reference ASM1883169v1 Primary Assembly

      Range
      10794230..10797272 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_043235990.1 → XP_043091925.1  60S ribosomal protein L27

      Related
      ENSPRZP00000032981.1, ENSPRZT00000039401.1
      Conserved Domains (1) summary
      cl00354
      Location:1 → 136
      KOW; an acronym for the authors' surnames (Kyrpides, Ouzounis and Woese)
    Nucleotide Protein
    Heading Accession and Version

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