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    RUNX3 RUNX family transcription factor 3 [ Dermochelys coriacea (leatherback sea turtle) ]

    Gene ID: 119845566, updated on 8-May-2024

    Summary

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    Gene symbol
    RUNX3
    Gene description
    RUNX family transcription factor 3
    See related
    EnsemblRapid:ENSDCOG00030000703
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Dermochelys coriacea
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Americhelydia; Chelonioidea; Dermochelyidae; Dermochelys
    Orthologs
    human mouse all
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    Genomic context

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    See RUNX3 in Genome Data Viewer
    Location:
    chromosome: 19
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    101 current rDerCor1.pri.v4 (GCF_009764565.3) 19 NC_050086.2 (8853638..8966475, complement)
    100 previous assembly rDerCor1.pri.v3 (GCF_009764565.2) 19 NC_050086.1 (14902359..14963943, complement)

    Chromosome 19 - NC_050086.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC122458267 Neighboring gene chloride intracellular channel 4 Neighboring gene uncharacterized LOC122458269 Neighboring gene SYF2 pre-mRNA splicing factor

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in hemopoiesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in neuron differentiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of cell differentiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    runt-related transcription factor 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Dermochelys coriacea Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference rDerCor1.pri.v4

    Genomic

    1. NC_050086.2 Reference rDerCor1.pri.v4

      Range
      8853638..8966475 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_043506049.1 → XP_043361984.1  runt-related transcription factor 3 isoform X2

    2. XM_043506050.1 → XP_043361985.1  runt-related transcription factor 3 isoform X3

      Related
      ENSDCOP00030001945.1, ENSDCOT00030002110.1

    3. XM_038378019.2 → XP_038233947.2  runt-related transcription factor 3 isoform X1

    4. XM_043506051.1 → XP_043361986.1  runt-related transcription factor 3 isoform X4

    Nucleotide Protein
    Heading Accession and Version

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