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    RREB1 ras responsive element binding protein 1 [ Gallus gallus (chicken) ]

    Gene ID: 395920, updated on 3-Dec-2024

    Summary

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    Symbol
    RREB1provided by CGNC
    Full Name
    ras responsive element binding protein 1provided by CGNC
    Primary source
    CGNC:9702
    See related
    Ensembl:ENSGALG00010010349
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Also known as
    RREB-1
    Orthologs
    human mouse all
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    Genomic context

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    See RREB1 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 2 NC_052533.1 (64380281..64503142, complement)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 2 NC_052574.1 (64328974..64451785, complement)

    Chromosome 2 - NC_052533.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124417766 Neighboring gene RIO kinase 1 Neighboring gene signal sequence receptor subunit 1 Neighboring gene uncharacterized LOC107051677 Neighboring gene uncharacterized LOC121109961 Neighboring gene uncharacterized LOC101751974 Neighboring gene uncharacterized LOC121109963

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Analysis of the structure and expression of the chicken gene encoding a homolog of the human RREB-1 transcription factor. Miyake JH, et al. Gene, 1997 Nov 20. PMID 9427563
    2. Genetic variation among chicken lines and mammalian species in specific genes. Zhou H, et al. Poult Sci, 2001 Mar. PMID 11261557
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription activator activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ras-responsive element-binding protein 1
    Names
    Ras-responsive element binding protein 1
    transcription factor RREB-1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_205049.3 → NP_990380.3  ras-responsive element-binding protein 1

      Status: VALIDATED

      Source sequence(s)
      JAENSK010000040
      UniProtKB/Swiss-Prot
      O57415, Q9I861
      UniProtKB/TrEMBL
      A0A8V0Y6P5
      Related
      ENSGALP00010014053.1, ENSGALT00010024789.1
      Conserved Domains (3) summary
      COG5189
      Location:16 → 126
      SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
      sd00017
      Location:49 → 69
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00019
      Location:1300 → 1320
      ZF_C2H2; C2H2 Zn finger [structural motif]

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052533.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      64380281..64503142 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015275839.4 → XP_015131325.2  ras-responsive element-binding protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8V0Y8Y2, A0A8V0Y8Y7
      Related
      ENSGALP00010014054.1, ENSGALT00010024791.1
      Conserved Domains (3) summary
      COG5189
      Location:58 → 209
      SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
      sd00017
      Location:132 → 152
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00019
      Location:1383 → 1403
      ZF_C2H2; C2H2 Zn finger [structural motif]

    2. XM_040675869.2 → XP_040531803.1  ras-responsive element-binding protein 1 isoform X2

      UniProtKB/Swiss-Prot
      O57415, Q9I861
      UniProtKB/TrEMBL
      A0A8V0Y6P5
      Conserved Domains (3) summary
      COG5189
      Location:16 → 126
      SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
      sd00017
      Location:49 → 69
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00019
      Location:1300 → 1320
      ZF_C2H2; C2H2 Zn finger [structural motif]

    3. XM_040675858.2 → XP_040531792.1  ras-responsive element-binding protein 1 isoform X2

      UniProtKB/Swiss-Prot
      O57415, Q9I861
      UniProtKB/TrEMBL
      A0A8V0Y6P5
      Conserved Domains (3) summary
      COG5189
      Location:16 → 126
      SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
      sd00017
      Location:49 → 69
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00019
      Location:1300 → 1320
      ZF_C2H2; C2H2 Zn finger [structural motif]

    4. XM_046918752.1 → XP_046774708.1  ras-responsive element-binding protein 1 isoform X2

      UniProtKB/Swiss-Prot
      O57415, Q9I861
      UniProtKB/TrEMBL
      A0A8V0Y6P5

    5. XM_040675879.2 → XP_040531813.1  ras-responsive element-binding protein 1 isoform X3

      UniProtKB/Swiss-Prot
      O57415, Q9I861
      Conserved Domains (3) summary
      smart00355
      Location:43 → 65
      ZnF_C2H2; zinc finger
      sd00017
      Location:17 → 37
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00019
      Location:1237 → 1257
      ZF_C2H2; C2H2 Zn finger [structural motif]

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052574.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      64328974..64451785 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046910381.1 → XP_046766337.1  ras-responsive element-binding protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8V0Y8Y2, A0A8V0Y8Y7

    2. XM_046910382.1 → XP_046766338.1  ras-responsive element-binding protein 1 isoform X2

      UniProtKB/Swiss-Prot
      O57415, Q9I861
      UniProtKB/TrEMBL
      A0A8V0Y6P5

    3. XM_046910383.1 → XP_046766339.1  ras-responsive element-binding protein 1 isoform X2

      UniProtKB/Swiss-Prot
      O57415, Q9I861
      UniProtKB/TrEMBL
      A0A8V0Y6P5

    4. XM_046910384.1 → XP_046766340.1  ras-responsive element-binding protein 1 isoform X2

      UniProtKB/Swiss-Prot
      O57415, Q9I861
      UniProtKB/TrEMBL
      A0A8V0Y6P5

    5. XM_046910385.1 → XP_046766341.1  ras-responsive element-binding protein 1 isoform X3

      UniProtKB/Swiss-Prot
      O57415, Q9I861
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O57415.2 GenPept UniProtKB/Swiss-Prot:O57415

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