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    TRIM46 tripartite motif containing 46 [ Mauremys mutica (yellowpond turtle) ]

    Gene ID: 123352041, updated on 22-Mar-2024

    Summary

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    Gene symbol
    TRIM46
    Gene description
    tripartite motif containing 46
    Locus tag
    KIL84_005779
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Mauremys mutica
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Testudinoidea; Geoemydidae; Geoemydinae; Mauremys
    Orthologs
    human mouse all
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    Genomic context

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    See TRIM46 in Genome Data Viewer
    Location:
    chromosome: 17
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    100 current ASM2049712v1 (GCF_020497125.1) 17 NC_059088.1 (29309507..29337193)

    Chromosome 17 - NC_059088.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 50 member 1 Neighboring gene dolichyl-phosphate mannosyltransferase subunit 3, regulatory Neighboring gene keratinocyte associated protein 2 Neighboring gene mucin-2-like Neighboring gene mucin-2-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_059088.1 Chromosome 17 Reference ASM2049712v1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    tripartite motif-containing protein 46

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Mauremys mutica Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM2049712v1 Primary Assembly

    Genomic

    1. NC_059088.1 Reference ASM2049712v1 Primary Assembly

      Range
      29309507..29337193
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_044991739.1 → XP_044847674.1  tripartite motif-containing protein 46 isoform X3

      Conserved Domains (6) summary
      smart00502
      Location:245 → 360
      BBC; B-Box C-terminal domain
      cd00063
      Location:419 → 499
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      cd12895
      Location:506 → 709
      SPRY_PRY_TRIM46; PRY/SPRY domain in tripartite motif-containing protein 46 (TRIM46)
      cd16757
      Location:4 → 38
      RING-HC_TRIM46; RING finger, HC subclass, found in tripartite motif-containing protein 46 (TRIM46) and similar proteins
      cd19786
      Location:198 → 243
      Bbox2_TRIM46_C-I; B-box-type 2 zinc finger found in tripartite motif-containing protein 46 (TRIM46) and similar proteins
      cd19849
      Location:144 → 195
      Bbox1_TRIM46_C-I; B-box-type 1 zinc finger found in tripartite motif-containing protein 46 (TRIM46) and similar proteins

    2. XM_044991738.1 → XP_044847673.1  tripartite motif-containing protein 46 isoform X3

      Conserved Domains (6) summary
      smart00502
      Location:245 → 360
      BBC; B-Box C-terminal domain
      cd00063
      Location:419 → 499
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      cd12895
      Location:506 → 709
      SPRY_PRY_TRIM46; PRY/SPRY domain in tripartite motif-containing protein 46 (TRIM46)
      cd16757
      Location:4 → 38
      RING-HC_TRIM46; RING finger, HC subclass, found in tripartite motif-containing protein 46 (TRIM46) and similar proteins
      cd19786
      Location:198 → 243
      Bbox2_TRIM46_C-I; B-box-type 2 zinc finger found in tripartite motif-containing protein 46 (TRIM46) and similar proteins
      cd19849
      Location:144 → 195
      Bbox1_TRIM46_C-I; B-box-type 1 zinc finger found in tripartite motif-containing protein 46 (TRIM46) and similar proteins

    3. XM_044991737.1 → XP_044847672.1  tripartite motif-containing protein 46 isoform X2

      UniProtKB/TrEMBL
      A0A9D4B415
      Conserved Domains (6) summary
      smart00502
      Location:268 → 383
      BBC; B-Box C-terminal domain
      cd00063
      Location:442 → 522
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      cd12895
      Location:529 → 732
      SPRY_PRY_TRIM46; PRY/SPRY domain in tripartite motif-containing protein 46 (TRIM46)
      cd16757
      Location:27 → 61
      RING-HC_TRIM46; RING finger, HC subclass, found in tripartite motif-containing protein 46 (TRIM46) and similar proteins
      cd19786
      Location:221 → 266
      Bbox2_TRIM46_C-I; B-box-type 2 zinc finger found in tripartite motif-containing protein 46 (TRIM46) and similar proteins
      cd19849
      Location:167 → 218
      Bbox1_TRIM46_C-I; B-box-type 1 zinc finger found in tripartite motif-containing protein 46 (TRIM46) and similar proteins

    4. XM_044991736.1 → XP_044847671.1  tripartite motif-containing protein 46 isoform X1

      Conserved Domains (6) summary
      smart00502
      Location:308 → 423
      BBC; B-Box C-terminal domain
      cd00063
      Location:482 → 562
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      cd12895
      Location:569 → 772
      SPRY_PRY_TRIM46; PRY/SPRY domain in tripartite motif-containing protein 46 (TRIM46)
      cd16757
      Location:67 → 101
      RING-HC_TRIM46; RING finger, HC subclass, found in tripartite motif-containing protein 46 (TRIM46) and similar proteins
      cd19786
      Location:261 → 306
      Bbox2_TRIM46_C-I; B-box-type 2 zinc finger found in tripartite motif-containing protein 46 (TRIM46) and similar proteins
      cd19849
      Location:207 → 258
      Bbox1_TRIM46_C-I; B-box-type 1 zinc finger found in tripartite motif-containing protein 46 (TRIM46) and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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